Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30690
         (318 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomy...    29   0.17 
SPCC1322.08 |srk1|mkp1|MAPK-activated protein kinase Srk1|Schizo...    24   4.8  
SPBC776.10c |cog6||Golgi transport complex peripheral subunit Co...    24   6.4  
SPAC23C11.16 |plo1||Polo kinase Plo1|Schizosaccharomyces pombe|c...    23   8.5  

>SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 29.1 bits (62), Expect = 0.17
 Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
 Frame = +1

Query: 10  KKKDYSKNEVKKQTND----DDYVLNKLFAKAAVKNALQHDVVV 129
           K K   ++ V K  +D    DD VL+ +FA A +++ L+HD ++
Sbjct: 863 KYKPPQESNVTKTNSDSTLGDDSVLDDIFASAGIQSTLKHDDIM 906


>SPCC1322.08 |srk1|mkp1|MAPK-activated protein kinase
           Srk1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 580

 Score = 24.2 bits (50), Expect = 4.8
 Identities = 11/30 (36%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
 Frame = +1

Query: 19  DYSKNEVKKQTNDDDY--VLNKLFAKAAVK 102
           +YS+++ K+ TN+ +Y   +  L AKA V+
Sbjct: 79  EYSRSKCKQPTNEKEYDKAIEALVAKAIVE 108


>SPBC776.10c |cog6||Golgi transport complex peripheral subunit Cog6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 675

 Score = 23.8 bits (49), Expect = 6.4
 Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = +1

Query: 4   KVKKK-DYSKNEVKKQTNDDDYVLN 75
           KVK   D  KNE  K+TND   +LN
Sbjct: 98  KVKNSIDSYKNEWSKKTNDAQILLN 122


>SPAC23C11.16 |plo1||Polo kinase Plo1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 683

 Score = 23.4 bits (48), Expect = 8.5
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = +1

Query: 22  YSKNEVKKQTNDDDYVLNKLFAKAAVKNALQHDVVVG 132
           Y+   + K++  +D    KLF +  V  ++ H  +VG
Sbjct: 66  YAAKVIAKRSLQNDKTKLKLFGEIKVHQSMSHPNIVG 102


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 811,378
Number of Sequences: 5004
Number of extensions: 9605
Number of successful extensions: 32
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 85983492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)