Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30684
         (756 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|c...    31   0.23 
SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr 1|||...    27   2.2  
SPAC13F5.02c |ptr6|taf7|transcription factor TFIID complex subun...    27   2.2  
SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1...    27   3.8  
SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit Cdc22|...    26   6.7  
SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyce...    25   8.8  
SPCC74.05 |rpl2702|rpl27-2|60S ribosomal protein L27|Schizosacch...    25   8.8  

>SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 432

 Score = 30.7 bits (66), Expect = 0.23
 Identities = 16/72 (22%), Positives = 37/72 (51%)
 Frame = +3

Query: 504 LKQKFQPAKNRVKQYPNDLTHHNPHAEAPKPKPELKLEIRNPDPLRRTNQPLNVKDLETR 683
           L +  + +K  + Q+ N       H+E  + K E+K E + P+ +++     + + +   
Sbjct: 181 LAEHLENSKKTILQHDNKEEDKEIHSEENETKDEIKSEKKEPE-IKKQEGGSSTEKVGQP 239

Query: 684 TSQSDKSQGATT 719
           +S  DK++G+T+
Sbjct: 240 SSSDDKAKGSTS 251


>SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 601

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 16/67 (23%), Positives = 30/67 (44%)
 Frame = +3

Query: 549 PNDLTHHNPHAEAPKPKPELKLEIRNPDPLRRTNQPLNVKDLETRTSQSDKSQGATTPKT 728
           P      N   E+P  KP +   + +P P+  TN+   + D++T +   D       P  
Sbjct: 203 PTQGASSNVTPESPPEKP-IPSFVLSPPPVSATNEANKLSDIQTSSPSQDIPAKHLEPLH 261

Query: 729 ISTALSN 749
           ++ +LS+
Sbjct: 262 LNRSLSS 268


>SPAC13F5.02c |ptr6|taf7|transcription factor TFIID complex subunit
           Taf7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 393

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +3

Query: 537 VKQYPNDLTHHNPHAEAPKPKPELKLEIRNPDPLRRT 647
           V+  PND     P    P P P++K++ R P   R T
Sbjct: 9   VQPPPNDSRSSTPATGPPPPIPKIKIKTREPKGPRLT 45


>SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 743

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = -1

Query: 426 SEQFELHGVCFPNRWVAGPSPNVACTSNPIDNLGIP 319
           S+Q        P+  +  PSP+++ T  P  N+G P
Sbjct: 548 SQQLNPAPTAMPHPNITSPSPSISVTQRPAVNVGPP 583


>SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit
           Cdc22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = +3

Query: 15  QASGGFEVKIQI*KVSYHSACVCSCE--NVHGALEITE 122
           +++G  ++ IQI +  YH+A   SCE   V G  E  E
Sbjct: 519 ESAGAKKLNIQIFETIYHAALEASCEIAQVEGTYESYE 556


>SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1112

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 18/92 (19%), Positives = 42/92 (45%), Gaps = 5/92 (5%)
 Frame = +3

Query: 486  RVSWRYLKQKFQPAKNRVKQYPNDLTHHNPHAEAPKPKPELKLEIRNPDPL-----RRTN 650
            RV++ +  ++ +   N +  + N +++ +P +E  +   +   E +  D L     RR  
Sbjct: 1000 RVAYHFKSKRLE---NALSSFKNQISNQSPMSEEIQADADAFGESKGSDELQSRILRRKK 1056

Query: 651  QPLNVKDLETRTSQSDKSQGATTPKTISTALS 746
               +    ++ +   D    + TPKT S+++S
Sbjct: 1057 MMASKNSSDSDSDSEDNFLASLTPKTNSSSIS 1088


>SPCC74.05 |rpl2702|rpl27-2|60S ribosomal protein
           L27|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 136

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = +3

Query: 579 AEAPKPKPELK-LEIRNPDPLRRTNQPLNVKDLETRTSQSDKSQGATTPKTISTALSNRH 755
           A+  + KP +K +   +  P R   +  N+K L T T+ S+ SQ +   KT+      ++
Sbjct: 63  AKRSRVKPFIKVINYNHLMPTRYALELDNLKGLVTPTTFSEPSQRSAAKKTVKNTFEEKY 122


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,906,771
Number of Sequences: 5004
Number of extensions: 55747
Number of successful extensions: 171
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)