Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30684
(756 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1522 + 27651983-27652690 30 1.7
04_04_0126 + 22952577-22952871,22952912-22953519,22954125-229545... 30 2.3
02_05_0930 - 32801737-32801936,32802038-32802107 29 4.0
05_05_0005 + 21442819-21442916,21443053-21443119,21443226-214432... 29 5.3
02_05_0338 - 28084169-28084366,28084414-28085225,28085565-280855... 28 7.0
02_01_0189 - 1273313-1274157,1274595-1275549 28 7.0
08_02_1271 - 25762750-25764276 28 9.2
07_03_1026 - 23369298-23370326 28 9.2
07_01_0784 + 6083477-6083653,6086052-6086238,6086672-6086844,608... 28 9.2
06_01_0353 + 2545995-2546208,2546362-2546492,2546846-2546929,254... 28 9.2
04_03_0329 - 14454840-14454862,14483886-14485630,14485843-14486648 28 9.2
02_05_0561 - 29965968-29966326,29966375-29966414,29966877-299669... 28 9.2
01_05_0147 + 18597194-18597643,18598347-18598681,18600073-186001... 28 9.2
>08_02_1522 + 27651983-27652690
Length = 235
Score = 30.3 bits (65), Expect = 1.7
Identities = 22/63 (34%), Positives = 29/63 (46%)
Frame = +3
Query: 159 AGVASAQITLDGIRCGQLICQLDEYCSPETNRCAPCNVVCNKTHHNYDSGLCVKECQGYL 338
A ++S +T++ I G L D YCS E C P N VC+ G EC L
Sbjct: 27 ACISSPSLTIEAISDG-LRGLGDIYCSIEEIMCLPSNQVCSPQQRKLLDG--EMECSLEL 83
Query: 339 LDL 347
LD+
Sbjct: 84 LDM 86
>04_04_0126 +
22952577-22952871,22952912-22953519,22954125-22954596,
22954882-22954955,22955559-22955937,22956659-22956711
Length = 626
Score = 29.9 bits (64), Expect = 2.3
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +2
Query: 581 RSAETETRTQARNTKPGSPKTNEPTSQREGLRDQNL 688
R +TE + + R + G+P+T P ++R+ RD+ L
Sbjct: 486 RYRKTEAKNRKRAAEKGNPQTKSPLTRRKSERDEAL 521
>02_05_0930 - 32801737-32801936,32802038-32802107
Length = 89
Score = 29.1 bits (62), Expect = 4.0
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +3
Query: 246 TNRCAPCNVVCNKTHHNYDSGLCVKECQ 329
T + C V N+ + DSGLCV CQ
Sbjct: 27 TAQLETCTEVINREYPTCDSGLCVANCQ 54
>05_05_0005 +
21442819-21442916,21443053-21443119,21443226-21443291,
21443368-21443414,21443480-21443543,21443627-21443707,
21443781-21443823,21443912-21443961,21444262-21444343,
21445045-21445120,21445451-21445558,21445782-21445833,
21445911-21446570,21446652-21448067
Length = 969
Score = 28.7 bits (61), Expect = 5.3
Identities = 12/48 (25%), Positives = 25/48 (52%)
Frame = +3
Query: 564 HHNPHAEAPKPKPELKLEIRNPDPLRRTNQPLNVKDLETRTSQSDKSQ 707
HH ++ PK ++ +R LR N P++ ++ ++ S+K+Q
Sbjct: 403 HHRGESKQPKIIEKIMTTLREESRLRENNSPVSSSGVKLTSAVSNKNQ 450
>02_05_0338 -
28084169-28084366,28084414-28085225,28085565-28085595,
28085638-28086214,28086439-28087145,28087188-28087228,
28087253-28087366,28087517-28088108
Length = 1023
Score = 28.3 bits (60), Expect = 7.0
Identities = 15/56 (26%), Positives = 28/56 (50%)
Frame = -3
Query: 193 PSRVI*AEATPARIRTHTNPDISLSVISKAPCTFSQEQTQALWYDTF*I*ILTSKP 26
PS +I + TP HT+ +S +S+AP +++T + D F + ++ P
Sbjct: 589 PSEIIPSSITPPEQTEHTHELVSEEDVSEAPRRSKRQRTAKSFGDDFTVYLVDDTP 644
>02_01_0189 - 1273313-1274157,1274595-1275549
Length = 599
Score = 28.3 bits (60), Expect = 7.0
Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Frame = +3
Query: 147 VLILAGVASAQITLDGIRC-GQLICQLDEYCSPETN-RCAPCNV 272
VL +AG + DG G +C D +CSPE C P V
Sbjct: 542 VLGVAGAGGVSVVRDGCALEGLCVCSEDAHCSPEKGYLCRPGRV 585
>08_02_1271 - 25762750-25764276
Length = 508
Score = 27.9 bits (59), Expect = 9.2
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Frame = +3
Query: 147 VLILAGVASAQITLDGIRC-GQLICQLDEYCSPETN-RCAP 263
VL +AG + +G G +C DE+CSPE C P
Sbjct: 447 VLGVAGAGGVNVARNGCGMEGLCVCSEDEHCSPEKGYLCRP 487
>07_03_1026 - 23369298-23370326
Length = 342
Score = 27.9 bits (59), Expect = 9.2
Identities = 17/59 (28%), Positives = 23/59 (38%)
Frame = +1
Query: 574 LMPKRRNRNPNSSSKYETRIP*DERTNLST*RT*RPEPHSRIKVKAQPRQRR*APLSVT 750
+ P R R + K E R+P D + +T RPE +QP R P T
Sbjct: 21 IKPARAARAEEDAGKQEERLPMDHPLSTTTTTKRRPEGEESSGAASQPAPERVNPTGTT 79
>07_01_0784 +
6083477-6083653,6086052-6086238,6086672-6086844,
6087520-6087678,6088677-6088817,6088880-6088941,
6089120-6089255,6091142-6091236,6091333-6091448,
6091538-6091667,6091757-6091811,6091889-6091930,
6092534-6092656
Length = 531
Score = 27.9 bits (59), Expect = 9.2
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +3
Query: 579 AEAPKPKPELKLEIRNPDPLRRTNQPLNVKDLETRTSQSDKS 704
A AP+P P ++ P+R N+ LN LE S +S
Sbjct: 37 AAAPQPPPRAAADVVAASPVRSQNEDLNKPLLEILDDHSSQS 78
>06_01_0353 +
2545995-2546208,2546362-2546492,2546846-2546929,
2546972-2547316,2547327-2547582,2547683-2547879
Length = 408
Score = 27.9 bits (59), Expect = 9.2
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +3
Query: 63 YHSACVCSCENVHGALEITEREMSGFVCVLILAGVASAQITLDGIRC 203
YH+A + S NV+ ++ SGF V L +S+Q+ + +RC
Sbjct: 194 YHNASLSSRYNVNSYCDLLISIFSGFANVSTLPPPSSSQLLYNCMRC 240
>04_03_0329 - 14454840-14454862,14483886-14485630,14485843-14486648
Length = 857
Score = 27.9 bits (59), Expect = 9.2
Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Frame = +3
Query: 519 QPAKNRVKQ---YPNDLTHHNPHAEAPKPKPELKLEIRNPDPLRRTNQ 653
Q A RV+ YP + + P+P P + +R P P ++ NQ
Sbjct: 542 QGANQRVRYTNPYPGGSSSQQQQQQQPRPAPRPQFVVRVPQPQQQQNQ 589
>02_05_0561 -
29965968-29966326,29966375-29966414,29966877-29966951,
29967003-29967107,29967453-29967592,29967691-29967775
Length = 267
Score = 27.9 bits (59), Expect = 9.2
Identities = 12/41 (29%), Positives = 18/41 (43%)
Frame = +3
Query: 207 QLICQLDEYCSPETNRCAPCNVVCNKTHHNYDSGLCVKECQ 329
+ C +EY + E+N CA + Y GL EC+
Sbjct: 182 EFACPFNEYINDESNDCASTMFSYINLYGKYPPGLFANECR 222
>01_05_0147 +
18597194-18597643,18598347-18598681,18600073-18600147,
18600325-18600427,18601554-18601642,18602953-18603064,
18604093-18604146,18604271-18604319,18606236-18606347,
18606389-18606436,18607000-18607327
Length = 584
Score = 27.9 bits (59), Expect = 9.2
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Frame = +2
Query: 563 ASQPSCRSAETETRT---QARNTKPGSPKTNEPTSQREGLRDQNLTVG*KSRRNHAKDDK 733
AS PS SA + +R+ ++R+ GS + +S R + + G +SRR+ DD+
Sbjct: 36 ASSPSPSSASSPSRSPDRRSRSRSSGSKRRKASSSSRRHRHHHHKSSG-RSRRSRDDDDE 94
Query: 734 HR 739
R
Sbjct: 95 RR 96
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,077,848
Number of Sequences: 37544
Number of extensions: 399200
Number of successful extensions: 1205
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1197
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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