Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30684
         (756 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0)                34   0.14 
SB_7843| Best HMM Match : DUF740 (HMM E-Value=0.5)                     32   0.58 
SB_44364| Best HMM Match : Metallothionein (HMM E-Value=6.1)           31   0.76 
SB_11586| Best HMM Match : CLN3 (HMM E-Value=8.3e-10)                  30   1.8  
SB_7120| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.8  
SB_50230| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.8  
SB_8972| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.8  
SB_8478| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.8  
SB_5192| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.3  
SB_51494| Best HMM Match : Drf_FH1 (HMM E-Value=2.4)                   29   3.1  
SB_13716| Best HMM Match : LIM (HMM E-Value=0)                         29   4.1  
SB_11304| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.4  
SB_55436| Best HMM Match : ig (HMM E-Value=1.2e-24)                    28   7.1  
SB_55110| Best HMM Match : Squash (HMM E-Value=0.21)                   28   7.1  
SB_9843| Best HMM Match : LIM (HMM E-Value=8.4e-07)                    28   7.1  
SB_37749| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.4  
SB_30968| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.4  
SB_23465| Best HMM Match : Pkinase_Tyr (HMM E-Value=3.1e-07)           28   9.4  
SB_41869| Best HMM Match : Laminin_EGF (HMM E-Value=9.7e-23)           28   9.4  
SB_16967| Best HMM Match : Laminin_EGF (HMM E-Value=0)                 28   9.4  

>SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0)
          Length = 3891

 Score = 33.9 bits (74), Expect = 0.14
 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
 Frame = +3

Query: 189 DGIRCGQLICQLDEYCSPETNRCAPCNVVCNKTH---HNYDSG 308
           D   CG+  C+ DE+    T+RC P + VC+ T+    NYD G
Sbjct: 118 DESTCGEGTCRPDEWHCIGTSRCIPLSRVCDGTNDCGDNYDEG 160


>SB_7843| Best HMM Match : DUF740 (HMM E-Value=0.5)
          Length = 1362

 Score = 31.9 bits (69), Expect = 0.58
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
 Frame = +3

Query: 597  KPELKLEIRNPDPLRRTNQ--PLNVKDLETRTSQSDKSQGATTPKTISTALSN 749
            KP   +  RN  P+R T+   P NVK + TR ++ +K +  T   T   A+SN
Sbjct: 868  KPNGSVRDRNTSPIRFTSTTIPENVKLIRTRIAEREKLEFDTETNTAKHAVSN 920


>SB_44364| Best HMM Match : Metallothionein (HMM E-Value=6.1)
          Length = 202

 Score = 31.5 bits (68), Expect = 0.76
 Identities = 14/51 (27%), Positives = 22/51 (43%)
 Frame = +3

Query: 177 QITLDGIRCGQLICQLDEYCSPETNRCAPCNVVCNKTHHNYDSGLCVKECQ 329
           ++ L  I CG   C  ++ C PET  C    + C   + N+     +  CQ
Sbjct: 114 ELRLSRILCG---CSCEDECYPETCECILNGIGCQVDYGNFPCSCSISNCQ 161


>SB_11586| Best HMM Match : CLN3 (HMM E-Value=8.3e-10)
          Length = 507

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = -3

Query: 562 VKSLGYCFTRFLAGWN 515
           V+  GYCFTR L GWN
Sbjct: 482 VEDTGYCFTRSLHGWN 497


>SB_7120| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 559

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 17/68 (25%), Positives = 28/68 (41%)
 Frame = +3

Query: 549 PNDLTHHNPHAEAPKPKPELKLEIRNPDPLRRTNQPLNVKDLETRTSQSDKSQGATTPKT 728
           P D    +P    PK K  L  EI+         +P + K    RTS ++  +  TTP  
Sbjct: 454 PQDWNKEHPDLSTPK-KTALVAEIKKEAEEEEEKEPKSEKKKRKRTSDNESEKEETTPSK 512

Query: 729 ISTALSNR 752
           +  +  ++
Sbjct: 513 LKKSKKDK 520


>SB_50230| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 131

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
 Frame = +3

Query: 525 AKNRVKQYPNDLTHHNPHAEAPKPKPELKLEIRNPDPLRRTNQPLNV-KDLETRTSQSDK 701
           A  R+ Q P   +   P    P+P+PE  L++  P P   T +P    K    R +++D+
Sbjct: 35  AMGRLAQLPG-ASRAAPPPPVPEPEPEPDLDLDLPVPPHETPRPKKTGKRQPMRKAKADR 93

Query: 702 SQGATTPKTI 731
             G + P  +
Sbjct: 94  PLGPSPPSAL 103


>SB_8972| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 124

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
 Frame = +3

Query: 507 KQKFQPAKNRVKQYPNDLTHHNPHAEAPKPKPELKLEIRNPDPLRRTNQPLNV-KDLETR 683
           K+ F+P     KQ P D   HN  +  P+     KL  R  D   + NQP+N+ K  E  
Sbjct: 18  KKSFEPDS---KQRPRD---HNYKSTVPR---STKLSYRRMDVHGKDNQPVNIKKSFEPD 68

Query: 684 TSQ--SDKSQGATTPKTISTAL 743
           ++Q   D +  +T P+  + AL
Sbjct: 69  SNQRPGDHNYKSTVPRFTNCAL 90


>SB_8478| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1033

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
 Frame = +3

Query: 162 GVASAQITLDGIRCGQLICQLDEY-CSPETNRCAPCNVVCN---KTHHNYDSGLC 314
           GV   +  LD +RCG  +C L+   C  +  + +     C    K   ++DSGLC
Sbjct: 251 GVKDCEHGLDELRCGSSVCPLNSLNCKDKHKQKSQSGEKCRFSFKGRCDFDSGLC 305


>SB_5192| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4865

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 16/54 (29%), Positives = 25/54 (46%)
 Frame = +3

Query: 561 THHNPHAEAPKPKPELKLEIRNPDPLRRTNQPLNVKDLETRTSQSDKSQGATTP 722
           T+H+P       K +LK+     D  + TN+ +  K+    TS    S G +TP
Sbjct: 816 TNHHPAVHGESDKADLKINTETTDDNKMTNR-VKTKEESLGTSPRRSSIGGSTP 868


>SB_51494| Best HMM Match : Drf_FH1 (HMM E-Value=2.4)
          Length = 157

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
 Frame = +3

Query: 525 AKNRVKQYPNDLTHHNPHAEAPKPKPELKLEIRNPDPLRRTNQPLNV-KDLETRTSQSDK 701
           A  R+ Q P   +   P    P+P+PE  L++  P P   T +P    K    R +++D+
Sbjct: 75  AMGRLAQLPG-ASRAAPPPPVPEPEPEPDLDLDLPVPPLETPRPKKTGKRQPMRKAKADR 133

Query: 702 SQGATTPKTI 731
             G + P  +
Sbjct: 134 PLGPSPPSAL 143


>SB_13716| Best HMM Match : LIM (HMM E-Value=0)
          Length = 401

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 16/65 (24%), Positives = 27/65 (41%)
 Frame = +3

Query: 555 DLTHHNPHAEAPKPKPELKLEIRNPDPLRRTNQPLNVKDLETRTSQSDKSQGATTPKTIS 734
           D +HH+ H +   P P    ++  P     T    N+ +L++      K Q  +T   I 
Sbjct: 68  DNSHHHHHGKEELPPPPPLPDLTTPSNTTSTVLAANLSELDSLLEDLGKPQYPSTESPID 127

Query: 735 TALSN 749
             LS+
Sbjct: 128 AMLSD 132


>SB_11304| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 420

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 18/59 (30%), Positives = 31/59 (52%)
 Frame = +2

Query: 569 QPSCRSAETETRTQARNTKPGSPKTNEPTSQREGLRDQNLTVG*KSRRNHAKDDKHRSQ 745
           QP  R+    T T  R+ KP   K ++  S+R+  RD+N     K+R  + + +K+R +
Sbjct: 309 QPG-RARTRPTETNERDVKPSGEKRDDGESKRDRDRDKNRD---KNRDRNREREKNRER 363


>SB_55436| Best HMM Match : ig (HMM E-Value=1.2e-24)
          Length = 703

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 237 SPETNRCAPCNVVCNKTHHNY 299
           S ETN  +P N++CN  H +Y
Sbjct: 640 SLETNTASPPNIICNSGHASY 660


>SB_55110| Best HMM Match : Squash (HMM E-Value=0.21)
          Length = 573

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +3

Query: 213 ICQLDEYCSPETNRCAP 263
           +C+  EYC P  NRC P
Sbjct: 267 VCKSTEYCHPVLNRCLP 283


>SB_9843| Best HMM Match : LIM (HMM E-Value=8.4e-07)
          Length = 2128

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 16/48 (33%), Positives = 20/48 (41%)
 Frame = +2

Query: 518 PASQEPREAVP**LDASQPSCRSAETETRTQARNTKPGSPKTNEPTSQ 661
           P S EP             S  S E ETR    +T+P SP   EP ++
Sbjct: 850 PVSPEPENQYNHYYQTRPVSPPSKEPETRYYQEDTRPASPPAKEPETR 897


>SB_37749| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1103

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 16/64 (25%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
 Frame = +2

Query: 560 DASQPSCRSAETETRTQARNTKPGSPKTNEPT--SQREGLRDQNLTVG*KSRRNHAKDDK 733
           D  +P+  SA  + + +AR+   G     E    ++R+   D+  + G +  ++ ++DD 
Sbjct: 753 DPKRPAVGSARPDEKGRARDFFGGDVNARERRVDARRDVPADRRDSKGHRDEKSRSRDDT 812

Query: 734 HRSQ 745
           HRS+
Sbjct: 813 HRSK 816


>SB_30968| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 156

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +3

Query: 237 SPETNRCAPCNVVCNKTHHN 296
           SP T    PC   C K HHN
Sbjct: 64  SPFTKHKRPCTAPCRKAHHN 83


>SB_23465| Best HMM Match : Pkinase_Tyr (HMM E-Value=3.1e-07)
          Length = 1118

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = +3

Query: 627 PDPLRRTNQPLNVKDLETRTSQSDKSQGATTPKTISTAL 743
           PD +  +NQP     L    S  +KS    TP+T S AL
Sbjct: 122 PDSMDNSNQPSVHPKLPISESSKEKSTPPNTPQTSSKAL 160


>SB_41869| Best HMM Match : Laminin_EGF (HMM E-Value=9.7e-23)
          Length = 198

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 15/46 (32%), Positives = 17/46 (36%), Gaps = 1/46 (2%)
 Frame = +3

Query: 198 RCGQLICQ-LDEYCSPETNRCAPCNVVCNKTHHNYDSGLCVKECQG 332
           RC    C     +C PET  C  C +      H Y   LC    QG
Sbjct: 14  RCVLCSCNDRSRFCHPETGVCTDCKI----GTHGYRCELCTNNVQG 55


>SB_16967| Best HMM Match : Laminin_EGF (HMM E-Value=0)
          Length = 1706

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 15/46 (32%), Positives = 17/46 (36%), Gaps = 1/46 (2%)
 Frame = +3

Query: 198  RCGQLICQ-LDEYCSPETNRCAPCNVVCNKTHHNYDSGLCVKECQG 332
            RC    C     +C PET  C  C +      H Y   LC    QG
Sbjct: 1004 RCVLCSCNDRSRFCHPETGVCTDCKI----GTHGYRCELCTNNVQG 1045


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,959,308
Number of Sequences: 59808
Number of extensions: 474608
Number of successful extensions: 1545
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1372
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1538
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2058295707
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)