Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30684
         (756 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    24   1.8  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   5.4  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   5.4  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   5.4  
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    22   7.1  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     22   7.1  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    21   9.4  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      21   9.4  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -1

Query: 576  EGCDASSH*GTASRGSWLAGTFALNISKR 490
            +G  +S     +S GSW AGT +    KR
Sbjct: 1064 DGITSSGSDSGSSNGSWTAGTVSQQKQKR 1092


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -2

Query: 752 PVTESGAYRLWRGCALTFI 696
           PV+ + A  +W G  LTF+
Sbjct: 297 PVSYTKAIDIWTGVCLTFV 315


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -2

Query: 752 PVTESGAYRLWRGCALTFI 696
           PV+ + A  +W G  LTF+
Sbjct: 297 PVSYTKAIDIWTGVCLTFV 315


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 12/40 (30%), Positives = 17/40 (42%)
 Frame = -3

Query: 205  PHLMPSRVI*AEATPARIRTHTNPDISLSVISKAPCTFSQ 86
            P +    VI    T   ++   NPD +  V S    TFS+
Sbjct: 935  PFVYTFNVIKLTKTSGTVQAQINPDFAFIVNSNLRLTFSK 974


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 13/55 (23%), Positives = 25/55 (45%)
 Frame = +3

Query: 501 YLKQKFQPAKNRVKQYPNDLTHHNPHAEAPKPKPELKLEIRNPDPLRRTNQPLNV 665
           Y+ Q  +P   R+++ P     +N     P+P+P      R P+     N+P+ +
Sbjct: 105 YIPQP-RPPHPRLRREPEAEPGNNRPVYIPQPRPPHPRLRREPEAEPGNNRPVYI 158


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 15/58 (25%), Positives = 24/58 (41%)
 Frame = +3

Query: 489 VSWRYLKQKFQPAKNRVKQYPNDLTHHNPHAEAPKPKPELKLEIRNPDPLRRTNQPLN 662
           +++R    + Q  +  V+ Y       +     P P   L L   +PD LRR  Q +N
Sbjct: 284 IAFRTPTYRMQQVEQPVQVYIQLKRPSDGATSEPFPFLMLPLGADDPDSLRRKRQKIN 341


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
          monooxygenase protein.
          Length = 499

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -2

Query: 59 YFLNLNFNFKASRGLTG 9
          Y+L   F+F  SRG+ G
Sbjct: 20 YYLTSTFDFWKSRGVVG 36


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 14/58 (24%), Positives = 23/58 (39%)
 Frame = +3

Query: 561 THHNPHAEAPKPKPELKLEIRNPDPLRRTNQPLNVKDLETRTSQSDKSQGATTPKTIS 734
           +HH+ H      +    L   NPD  +R  +  N K L    +  D+     +P  +S
Sbjct: 72  SHHHLHHHQVLYQQSPYLMYENPDEEKRYQEHPNGKILRELQTDYDRRLHDNSPSFLS 129


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,565
Number of Sequences: 438
Number of extensions: 4212
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23753925
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)