Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30682
         (560 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    23   2.8  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   4.9  
DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex det...    21   6.4  
DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex det...    21   6.4  
DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex det...    21   6.4  
DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex det...    21   6.4  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   8.5  

>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +2

Query: 56  FLLRFDFNQSCSGFCSDSFYGFRFNNHNF 142
           F L +++  + S       YGF FN+ NF
Sbjct: 369 FPLEYEYVLAVSNRIQKVIYGFDFNDVNF 397


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = +2

Query: 416 NWIIYNHSRCCNNSFGTHRYLIINYFGN 499
           N ++YNH+R  +    +  YL+   F +
Sbjct: 217 NLLLYNHARLMSQDNHSKEYLVSIMFSH 244


>DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +2

Query: 416 NWIIYNHSRCCNNSFGTHRYLIINY 490
           N+  YN++   NN++   +Y  INY
Sbjct: 93  NYNNYNNNNYNNNNYKKLQYYNINY 117


>DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +2

Query: 416 NWIIYNHSRCCNNSFGTHRYLIINY 490
           N+  YN++   NN++   +Y  INY
Sbjct: 93  NYNNYNNNNYNNNNYKKLQYYNINY 117


>DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +2

Query: 416 NWIIYNHSRCCNNSFGTHRYLIINY 490
           N+  YN++   NN++   +Y  INY
Sbjct: 93  NYNNYNNNNYNNNNYKKLQYYNINY 117


>DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +2

Query: 416 NWIIYNHSRCCNNSFGTHRYLIINY 490
           N+  YN++   NN++   +Y  INY
Sbjct: 93  NYNNYNNNNYNNNNYKKLQYYNINY 117


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -2

Query: 466 GSKTIVAAPAVVVNDPIESSTGASATEVIN 377
           GS ++ A+PA      +ESST +   E  N
Sbjct: 237 GSGSLPASPADSGVSDVESSTSSGGNEDAN 266


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,929
Number of Sequences: 438
Number of extensions: 2375
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16195212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)