Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30680
         (794 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0138 - 1069616-1069894,1070056-1070607,1070689-1071046,107...    33   0.26 
11_01_0137 - 1137979-1138257,1138419-1138970,1139052-1139409,113...    33   0.26 
07_03_1344 - 25912639-25914060                                         31   0.80 
08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,322...    31   1.4  
09_06_0244 + 21822811-21823246,21823337-21823468,21823949-218240...    28   9.8  
03_04_0116 + 17406702-17409008,17409385-17409501,17409502-17409561     28   9.8  
01_05_0773 + 25062364-25062894,25063000-25063244,25063365-250637...    28   9.8  

>12_01_0138 -
           1069616-1069894,1070056-1070607,1070689-1071046,
           1071214-1071503,1072257-1072360,1072419-1072575,
           1073229-1073273,1073636-1073692
          Length = 613

 Score = 33.1 bits (72), Expect = 0.26
 Identities = 17/55 (30%), Positives = 29/55 (52%)
 Frame = +2

Query: 422 VGVTSVPGKEDEFKTNLNTTIEYAKALDAKKIHIMAGKVENPTPKHWETFEKNLL 586
           +GV ++P  +     N+  T+EY K+     +     K+E+PT  H+  F KN+L
Sbjct: 271 LGVQTMP--KTHHCLNMRLTVEYFKSTSIHTVQSNKQKLEDPTFHHYVIFSKNVL 323


>11_01_0137 -
           1137979-1138257,1138419-1138970,1139052-1139409,
           1139577-1139869,1140623-1140675,1140785-1140941,
           1141666-1141683,1141846-1141929,1142005-1142064,
           1142182-1142222,1142316-1142451
          Length = 676

 Score = 33.1 bits (72), Expect = 0.26
 Identities = 17/55 (30%), Positives = 29/55 (52%)
 Frame = +2

Query: 422 VGVTSVPGKEDEFKTNLNTTIEYAKALDAKKIHIMAGKVENPTPKHWETFEKNLL 586
           +GV ++P  +     N+  T+EY K+     +     K+E+PT  H+  F KN+L
Sbjct: 334 LGVQTMP--KTHHCLNMRLTVEYFKSTSIHTVQSNKQKLEDPTFHHYVIFSKNVL 386


>07_03_1344 - 25912639-25914060
          Length = 473

 Score = 31.5 bits (68), Expect = 0.80
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = +2

Query: 287 DAGFKAVESGFPFGFSLEQVRNAKQSAGLQQIAINLKTGDTTKGEVGV 430
           +AG  A+ S          VR   ++A + Q ++ L TG+T  GE+GV
Sbjct: 244 EAGIGAIASQLADRLPAGSVRLNSRAAAIGQSSVTLDTGETVSGELGV 291


>08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,
            3220080-3223195,3223303-3223561,3223665-3223951,
            3224029-3224364,3224463-3224604,3224690-3224910,
            3224990-3225151,3225242-3225400,3225488-3225787,
            3226306-3226569,3227370-3227453
          Length = 1855

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -1

Query: 587  IANFSQTSPNVSELDFPLYQPLCEFFSHPRPSH 489
            ++ +SQTSPN S    P Y P    +S P PS+
Sbjct: 1766 LSPYSQTSPNYSPTS-PTYSPTSPSYSQPSPSY 1797


>09_06_0244 + 21822811-21823246,21823337-21823468,21823949-21824037,
            21824135-21824224,21825033-21825603,21826097-21826734,
            21826978-21827098,21827223-21827337,21828234-21829723,
            21829830-21829901,21830151-21830196,21830413-21830515,
            21830591-21830674,21831035-21831475,21831651-21831746,
            21831896-21832045,21832131-21832274,21832414-21832527,
            21832621-21832803,21832901-21832945,21833058-21833192
          Length = 1764

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = +2

Query: 257  SILERYALAKDAG-FKAVESGFPFGFSLEQVRNAKQSAGLQQIAINLK 397
            ++ E+ +  +D+G FK ++SGF  GFS + V     S  L +  +  K
Sbjct: 870  TVKEKASACRDSGIFKELKSGFSSGFSSDVVTKFSASPELNKYGLEHK 917


>03_04_0116 + 17406702-17409008,17409385-17409501,17409502-17409561
          Length = 827

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = -2

Query: 790 FRNIMSNVASDLLKMKNVQHQSQIWTVNTFNNVHS-SSIITQEIFGHRILVDW 635
           F  I SN  +  +   N ++++ +WT N    VH+  S++T +  G  +L D+
Sbjct: 53  FLTIYSNAFAFSIWYTNSKNKTVVWTANRGRPVHARRSVVTLQKDGAMVLKDY 105


>01_05_0773 +
           25062364-25062894,25063000-25063244,25063365-25063749,
           25063857-25064282
          Length = 528

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = -2

Query: 295 SSVFSQSISFQNGRSFSKHKRQISTEFHYNKI 200
           + +FS S++   G  + KH+R ++  FH  K+
Sbjct: 145 TKLFSDSLANHEGEKWVKHRRILNPAFHLEKL 176


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,062,194
Number of Sequences: 37544
Number of extensions: 338334
Number of successful extensions: 887
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 860
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 887
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2150667972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)