Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30680
         (794 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          23   2.5  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      23   2.5  
AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.          23   2.5  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    21   10.0 

>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = +2

Query: 323 FGFSLEQVRNAKQSAGLQQIAINLKTGDTT 412
           FG  ++ V N      + +  +NLK+G  T
Sbjct: 525 FGHEVDLVHNYMNFMQMDEFVVNLKSGSNT 554


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = +2

Query: 323 FGFSLEQVRNAKQSAGLQQIAINLKTGDTT 412
           FG  ++ V N      + +  +NLK+G  T
Sbjct: 525 FGHEVDLVHNYMNFMQMDEFVVNLKSGSNT 554


>AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.
          Length = 226

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = +2

Query: 323 FGFSLEQVRNAKQSAGLQQIAINLKTGDTT 412
           FG  ++ V N      + +  +NLK+G  T
Sbjct: 151 FGHEVDLVHNYMNFMQMDEFVVNLKSGSNT 180


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -1

Query: 62  YCWVRVNKYHKIS 24
           Y W+  NKY KI+
Sbjct: 372 YIWIVSNKYQKIA 384


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,482
Number of Sequences: 438
Number of extensions: 4242
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25125039
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)