Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30661
         (791 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP1E11.07c |cwf18||complexed with Cdc5 protein Cwf18 |Schizosa...    52   1e-07
SPAP27G11.16 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    33   0.047
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    31   0.14 
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    29   0.76 
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    29   0.76 
SPAPB17E12.10c |||SAM-dependent methyltransferase|Schizosaccharo...    29   0.76 
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    28   1.3  
SPBC17G9.02c |||RNA polymerase II accessory factor, Cdc73 family...    28   1.8  
SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom...    27   2.3  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    27   2.3  
SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subuni...    27   2.3  
SPAC5H10.02c |||ThiJ domain protein|Schizosaccharomyces pombe|ch...    27   4.1  
SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces ...    27   4.1  
SPAC3F10.17 |||ribosome biogenesis protein Ltv1|Schizosaccharomy...    26   5.4  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   7.1  
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc...    26   7.1  
SPAC17G8.11c |||mannosyltransferase complex subunit |Schizosacch...    25   9.4  
SPAC644.04 |pct1||RNA 5'-triphosphatase|Schizosaccharomyces pomb...    25   9.4  

>SPCP1E11.07c |cwf18||complexed with Cdc5 protein Cwf18
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 142

 Score = 51.6 bits (118), Expect = 1e-07
 Identities = 23/55 (41%), Positives = 38/55 (69%)
 Frame = +3

Query: 318 IEEEVKDLLEAGKEKVVLQDLDITSLAPRKPDWDLKRDVAKKLERLERKTQRAIA 482
           IEE+ K  +E  +  V +++LD+ +L P+KP WDL+RD+ +++  LE + Q AIA
Sbjct: 72  IEEKTKRKIEE-QSSVPVEELDLVTLRPKKPTWDLERDLKERMRSLETQNQNAIA 125


>SPAP27G11.16 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 104

 Score = 33.1 bits (72), Expect = 0.047
 Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
 Frame = -2

Query: 511 PCFNLSQINS---AMALCVFRSNLSSFLATSRLRSQSGFLGAKLVMSRSWRTTFSLPASN 341
           PC+++ ++ S    +A+ +F    SSF  T R+        +K    + W TTFS+   +
Sbjct: 34  PCYSIEKLKSNRILIAVRLFSFAFSSFSTTLRILRDFIIAASKCEFEKIWSTTFSISFLS 93

Query: 340 KSFTSS 323
            +F SS
Sbjct: 94  FNFKSS 99


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 31.5 bits (68), Expect = 0.14
 Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
 Frame = -2

Query: 448 SSFLAT--SRLRSQSGFLGAKLVMSRSWRTTFSLPASNKSFTSSSITVGSASLS 293
           SSF  T  S   + S FL + ++ S S  ++  LP S  + TS+ +TV S+SLS
Sbjct: 212 SSFTTTTGSPYYNTSSFLPSSVISSASLSSSSVLPTSIITSTSTPVTVSSSSLS 265


>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 29.1 bits (62), Expect = 0.76
 Identities = 20/61 (32%), Positives = 33/61 (54%)
 Frame = -2

Query: 457 SNLSSFLATSRLRSQSGFLGAKLVMSRSWRTTFSLPASNKSFTSSSITVGSASLSLDSCN 278
           S+ SS  ++SR  S S F+   +  S    T    P+S+ S TSS +   +A+L+L++  
Sbjct: 223 SSSSSSSSSSRPSSSSSFI-TTMSSSTFISTVTVTPSSSSSSTSSEVPSSTAALALNASK 281

Query: 277 A 275
           A
Sbjct: 282 A 282


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 29.1 bits (62), Expect = 0.76
 Identities = 23/66 (34%), Positives = 32/66 (48%)
 Frame = -2

Query: 490  INSAMALCVFRSNLSSFLATSRLRSQSGFLGAKLVMSRSWRTTFSLPASNKSFTSSSITV 311
            I S+  L    S +SS    S L S SG   +    + S  ++FSL + N S +SSS+  
Sbjct: 3492 IGSSSVLSYASSIVSSVSLNSSLLSSSGGFSSSAFSTGS--SSFSLTSENGSVSSSSLVS 3549

Query: 310  GSASLS 293
             S  LS
Sbjct: 3550 SSPVLS 3555


>SPAPB17E12.10c |||SAM-dependent
           methyltransferase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 301

 Score = 29.1 bits (62), Expect = 0.76
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -1

Query: 647 LLACFKCML*VSYVKLLQDTSNLVIICNGRSVSSH 543
           L  CFKC+  + +   ++D    V  C+G+ +S H
Sbjct: 261 LSMCFKCVKKIQFKTKIKDELYAVYFCSGKQLSCH 295


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
 Frame = +3

Query: 255 SYKPQD-EALQESKLNDAEPTVIEEEVKDLLEAGKEKVVLQDLDITS 392
           SY+PQ+    +E   N+ E +++E+E+  LLE G++   L   ++ S
Sbjct: 15  SYEPQEINPGEEIPENEREISIVEDEIVCLLEKGEDDWYLVKRNVNS 61


>SPBC17G9.02c |||RNA polymerase II accessory factor, Cdc73
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 371

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +3

Query: 399 PRKPDWDLKRDVAKKLERLERKTQRAIAELIWDRLKHGNED 521
           P   DW+++      +ERL R T R +   +WD+L+   E+
Sbjct: 325 PATHDWNVEGIF---VERLRRHTDREVVSQLWDKLERWMEN 362


>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1158

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 30/100 (30%), Positives = 48/100 (48%), Gaps = 11/100 (11%)
 Frame = -2

Query: 559 GRLAVI--VIIALKLSSFPCFNLSQINSAMALCVFRSNLSSF-------LATSRLRSQSG 407
           G  AV+  VI  L L +  CF+   +    A+C   ++LSS        L TS + S+S 
Sbjct: 32  GLTAVVNDVIDTLLLGTSSCFDEDCLEKLFAICSHFADLSSSVRNKVYDLLTSNISSESA 91

Query: 406 FLGAKLVMSRSWRTTFSLPASNKSFT--SSSITVGSASLS 293
            L   ++ + +  T F++P +N   T  +  +TV S S S
Sbjct: 92  IL-EDMISANA--TDFTVPQTNLETTGIAFQLTVNSLSSS 128


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 21/71 (29%), Positives = 33/71 (46%)
 Frame = -2

Query: 496 SQINSAMALCVFRSNLSSFLATSRLRSQSGFLGAKLVMSRSWRTTFSLPASNKSFTSSSI 317
           S + SA A    +   SS LATS   S S         +  + T+F  P  + + +SSS 
Sbjct: 771 SNLPSATASSQSQLTNSSTLATSLYLSSSSSRTISTSSTNEYNTSFHAPTVSSTTSSSST 830

Query: 316 TVGSASLSLDS 284
           T  +A+  ++S
Sbjct: 831 TSLAANKGVNS 841



 Score = 26.2 bits (55), Expect = 5.4
 Identities = 31/104 (29%), Positives = 53/104 (50%), Gaps = 3/104 (2%)
 Frame = -2

Query: 577  SSSVMVGRLAVIVIIALKLSSFPCFNLSQI--NSAMALCVFRSNLSS-FLATSRLRSQSG 407
            SSS +V    V  I +  L S    + SQ+  +S +A  ++ S+ SS  ++TS     + 
Sbjct: 756  SSSAIVSSTTVSNISS-NLPSATASSQSQLTNSSTLATSLYLSSSSSRTISTSSTNEYNT 814

Query: 406  FLGAKLVMSRSWRTTFSLPASNKSFTSSSITVGSASLSLDSCNA 275
               A  V S +  ++ +  A+NK   S+SIT    SL+L+S ++
Sbjct: 815  SFHAPTVSSTTSSSSTTSLAANKGVNSNSIT----SLNLESTSS 854


>SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subunit
           Cct1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 556

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +1

Query: 205 QIILQMKQ*HCPNQNLEVTSLKMKHYKNPNL 297
           ++  +++  H  +QN EVT +K + YKN  L
Sbjct: 467 ELTAKLRAYHAASQNAEVTDVKKRGYKNYGL 497


>SPAC5H10.02c |||ThiJ domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 240

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +3

Query: 255 SYKPQDEALQESKLNDAEPTVIEEEVKD 338
           SYK  D +++ESKL D E  V  ++  D
Sbjct: 56  SYKFDDHSIEESKLGDFERKVFNDKNDD 83


>SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 965

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 17/51 (33%), Positives = 24/51 (47%)
 Frame = +2

Query: 323 RRSKRFVGGW*RKGGSPGSRHNKFSTEKTRLGPQTRCGQKAREIRTEDTES 475
           RRS  F     RK G+  S  N   +E + L PQT      + +R+  TE+
Sbjct: 109 RRSSSFFRRRHRKNGTHASTDNNPFSESSTLQPQTAERTSQQAVRSAITET 159


>SPAC3F10.17 |||ribosome biogenesis protein Ltv1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 386

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +3

Query: 273 EALQESKLNDAEPTVIEEEVKDLLEAGK 356
           E L+ S +ND E +  +EE + L+ +GK
Sbjct: 166 EQLEHSDINDEETSDFDEEFEKLVASGK 193


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 22/61 (36%), Positives = 33/61 (54%)
 Frame = -2

Query: 457 SNLSSFLATSRLRSQSGFLGAKLVMSRSWRTTFSLPASNKSFTSSSITVGSASLSLDSCN 278
           S  SS+L++S + S S    +    S S  T+ SL  S+   TSSS +  S+SLS  S +
Sbjct: 204 STSSSYLSSSSVVSSSSSPSSS---SSSTLTSSSLSTSSIPSTSSSSSSTSSSLSSSSSS 260

Query: 277 A 275
           +
Sbjct: 261 S 261


>SPBC30D10.10c |tor1||phosphatidylinositol kinase
            Tor1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2335

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 26/113 (23%), Positives = 42/113 (37%), Gaps = 2/113 (1%)
 Frame = +3

Query: 237  PKPKFRSYKPQDEALQESKLNDAEPTVIEEEVKDLLEAGKEKVVLQDLDITSLAPRKPDW 416
            P+P  + +  QDE L +  ++ A      E  + L     +  + + + I  L    P  
Sbjct: 1089 PRPSTKPFSTQDEVLTKLPVDQASLKAAWESSQKLTRDDWQDWIRR-ISI-ELLKESPSS 1146

Query: 417  DLKR--DVAKKLERLERKTQRAIAELIWDRLKHGNEDNLSAMITMTANRPTIT 569
             L+    +A     L R          WD L   N+ NL   I +  N P I+
Sbjct: 1147 ALRSCSTLAGIYHPLARDLFNVSFLSCWDELTESNKKNLVKSIELAMNAPNIS 1199


>SPAC17G8.11c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 356

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 17/56 (30%), Positives = 23/56 (41%)
 Frame = -1

Query: 434 HISFEVPVWFSRC*TCYVEILENHLFFTSLQQIFYFFFYHCWFCIIKFGFL*CFIL 267
           HI   VP  + +    + EI E   +  S    F F+  H W      GFL  FI+
Sbjct: 229 HIWVMVPELYEKSHHAFFEIYEGSSWHDS-DAGFVFYMLHHWAIFTFLGFLTFFIV 283


>SPAC644.04 |pct1||RNA 5'-triphosphatase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 303

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +3

Query: 618 LKHAFKASKQVDLNIKCSCDLKDKMPSGINTKGMTVLLC 734
           L  A+K +KQVDL  +   + +DK+    N     VL C
Sbjct: 144 LPFAYKHTKQVDLFYETEDNSRDKIRVSKNQSDNQVLAC 182


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,755,054
Number of Sequences: 5004
Number of extensions: 49000
Number of successful extensions: 183
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)