Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30661
(791 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1504 + 30633063-30633070,30633260-30633391,30633766-306339... 66 2e-11
10_08_0253 - 16196275-16196307,16196425-16196550,16196643-161967... 30 1.8
01_05_0724 - 24612712-24612852,24612985-24613038,24613340-246134... 29 3.2
12_02_0332 + 17653413-17653581,17654045-17654139,17654292-176544... 29 4.2
08_02_0584 - 19010345-19010656,19010959-19011018 29 4.2
08_01_0114 - 900530-901191,901269-901338,901536-901640,901721-90... 28 7.4
05_03_0356 + 12894195-12894237,12894347-12894484,12894868-128950... 28 7.4
03_05_0399 - 23799830-23800090,23803448-23803558,23803685-23803693 28 9.8
>06_03_1504 +
30633063-30633070,30633260-30633391,30633766-30633901,
30633992-30634106,30634230-30634288
Length = 149
Score = 66.5 bits (155), Expect = 2e-11
Identities = 33/91 (36%), Positives = 56/91 (61%)
Frame = +3
Query: 234 LPKPKFRSYKPQDEALQESKLNDAEPTVIEEEVKDLLEAGKEKVVLQDLDITSLAPRKPD 413
+P KFR+Y P DE L+ K+ E+ + E + K V + ++AP+ P+
Sbjct: 49 MPAMKFRNYLPHDEQLRGGKVAPVSLPKFEDPIS--AETTEPKQV--ENPFGNIAPKNPN 104
Query: 414 WDLKRDVAKKLERLERKTQRAIAELIWDRLK 506
WDLKRDV K++++LE++TQ+A+AE+ ++ K
Sbjct: 105 WDLKRDVQKRMDKLEKRTQKALAEIALEQQK 135
>10_08_0253 - 16196275-16196307,16196425-16196550,16196643-16196741,
16196822-16197001,16197090-16197371,16197471-16199141,
16199257-16199463,16199566-16199700,16199792-16200082,
16200403-16200621,16200876-16201034,16201120-16201181,
16201257-16201383,16201460-16201693,16201777-16202003,
16202163-16202257,16202341-16202468,16202574-16202594,
16202765-16202921,16203007-16203075,16203228-16203341,
16203415-16203491,16203576-16203688,16204432-16204507,
16204592-16204756,16204825-16204952,16205049-16205130,
16205426-16205548,16205633-16205860,16205933-16206034,
16206144-16206341,16206581-16206760,16206868-16207020,
16207690-16207797,16208201-16208355,16208786-16208912,
16209825-16209914,16209986-16210127,16210303-16210379,
16210467-16210582,16210638-16210773,16211130-16211198,
16211279-16211361,16211655-16211720,16211788-16211974,
16212054-16213547,16213635-16214165,16214234-16214363,
16214407-16215878,16216359-16216364,16216750-16217055,
16217364-16217468,16217577-16217772,16217862-16217929,
16218853-16220631,16221026-16221151,16221604-16221780,
16221997-16222128,16223461-16223498,16223710-16223788,
16224175-16224284,16224787-16224935,16225027-16225197,
16225281-16225552,16226355-16226442,16227942-16228369
Length = 5157
Score = 30.3 bits (65), Expect = 1.8
Identities = 14/40 (35%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
Frame = +3
Query: 606 YIRNLK--HAFKASKQVDLNIKCSCDLKDKMPSGINTKGM 719
Y+ NL+ H F ASK++ ++++ D+K ++PS I + M
Sbjct: 4227 YVMNLQMGHLFDASKKLTVSVRRLVDIKPELPSSIGMQLM 4266
>01_05_0724 -
24612712-24612852,24612985-24613038,24613340-24613429,
24613499-24613780,24613926-24614119,24614379-24614508,
24614610-24614690,24614766-24614891,24615019-24615076,
24615319-24615380,24615753-24615803,24615946-24616065,
24616280-24616403,24616832-24616920,24617304-24617396,
24617910-24618063,24618673-24619178
Length = 784
Score = 29.5 bits (63), Expect = 3.2
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
Frame = +3
Query: 237 PKPKFRSYKPQDEALQESKLNDAEPTVIEEEVKDLLEAGKEKVVLQDLDITSLAPRKPDW 416
P P P+ E + + + V EEE++DL+E G+ V+ + + A R DW
Sbjct: 63 PPPPELPAAPEAEEVVGTAAAEGGGKVEEEELEDLVEKGRAWVLALAAAVVAAARRFFDW 122
Query: 417 DLKRDVAK--KLERLERKTQRAI 479
+ D R +R+ QR I
Sbjct: 123 VVSGDWMSWWPFWRPDRRLQRLI 145
>12_02_0332 +
17653413-17653581,17654045-17654139,17654292-17654444,
17655013-17655117,17655197-17655268,17655514-17655626,
17655727-17655861,17655970-17656038,17656154-17656241,
17656348-17656419,17656505-17656605,17656724-17656841,
17656933-17656992,17657593-17657703,17659044-17659154
Length = 523
Score = 29.1 bits (62), Expect = 4.2
Identities = 32/98 (32%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Frame = +3
Query: 315 VIEEEVKD-------LLEAGKEKVVLQDLDITSLAPRKPDWDLK-----RDVAKKLERLE 458
VI++EVK+ L+E GK QDLD+ K ++ + RD KKLERL
Sbjct: 426 VIQQEVKEVIISYYILMEQGK--ATEQDLDLRCEELIKEEFGAECNFDVRDAVKKLERLG 483
Query: 459 RKTQRAIAELIWDRLKHGNE--DNLSAMITMTANR-PT 563
+ +I ++ LK NE N + + M A + PT
Sbjct: 484 IVHRDSIGRIVCVSLKRANEILGNTTEELVMRAQQSPT 521
>08_02_0584 - 19010345-19010656,19010959-19011018
Length = 123
Score = 29.1 bits (62), Expect = 4.2
Identities = 28/103 (27%), Positives = 48/103 (46%), Gaps = 5/103 (4%)
Frame = +3
Query: 240 KPKFRSYKPQDEALQESKLND---AEPTVIEEEVKDLLEAGKEK--VVLQDLDITSLAPR 404
K + KP+ E ++ + N A+P ++E K+ E GKEK V + D+ L +
Sbjct: 20 KEHAKEAKPEKEKKEKKEKNGEEAAKPAKEKKEKKEKKEKGKEKKEKVEETTDVAKLRAK 79
Query: 405 KPDWDLKRDVAKKLERLERKTQRAIAELIWDRLKHGNEDNLSA 533
D K++ L+ K Q +A L+ +L+ G N +A
Sbjct: 80 LEKLD------AKIDDLKAKKQEIVARLV--QLEEGATANAAA 114
>08_01_0114 - 900530-901191,901269-901338,901536-901640,901721-901831,
901912-902016,902245-902391,903273-903354,903445-903786,
903873-904177,904259-904435,904799-904852,905171-905254,
905855-905968,906048-906321,907552-907926,908003-908267,
908352-908538,908615-909052,909895-909966,910037-910630,
911471-911623,911700-911828,912326-912657,912705-912840,
913046-913491,913580-915087,915169-915431,915622-915738,
915844-916014,916743-916845,916930-916988,918360-918461,
918560-918649,918727-918877,919745-919830,919926-920102,
920915-920978,921859-922008,923132-923211,923311-923376,
924540-924747,925502-925575,925761-925848,926140-926312,
926541-926609,926698-926741,927074-927167,927290-927366,
927475-927552,927992-928085
Length = 3314
Score = 28.3 bits (60), Expect = 7.4
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +3
Query: 414 WDLKRDVAKKLERLERKTQRAIAELIWDRLKHGNEDNLSAMI 539
WDL AK + T ++ EL+W R HGN + L+ I
Sbjct: 1150 WDLLLS-AKDIMLSSSWTSPSVHELLWSRSSHGNANILNIRI 1190
>05_03_0356 +
12894195-12894237,12894347-12894484,12894868-12895018,
12895399-12895526,12895704-12895840,12896742-12896847,
12898659-12898762,12899159-12899281,12899620-12899700,
12900159-12900304,12902171-12902243,12902970-12903060,
12904978-12905018,12906079-12906153,12906402-12906569,
12907638-12907676,12907759-12907847,12908014-12908078,
12908794-12908840,12908924-12908983,12909168-12909239,
12910143-12910172,12910526-12910617,12910719-12910802,
12911941-12912046,12912171-12912233,12912776-12912870,
12913000-12913180
Length = 875
Score = 28.3 bits (60), Expect = 7.4
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -3
Query: 129 SYRQILHCPLLPYLLRGVST 70
SYR I+HC P+ L+G ST
Sbjct: 237 SYRDIMHCNKKPFYLKGGST 256
>03_05_0399 - 23799830-23800090,23803448-23803558,23803685-23803693
Length = 126
Score = 27.9 bits (59), Expect = 9.8
Identities = 10/23 (43%), Positives = 18/23 (78%)
Frame = +3
Query: 420 LKRDVAKKLERLERKTQRAIAEL 488
+K D AKKLERLE++ + ++++
Sbjct: 84 MKEDAAKKLERLEQEKESIVSQM 106
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,273,807
Number of Sequences: 37544
Number of extensions: 304515
Number of successful extensions: 870
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 841
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 868
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2138915688
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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