Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30661
         (791 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC020830-1|AAH20830.1|  166|Homo sapiens coiled-coil domain cont...   123   9e-28
AK096749-1|BAC04857.1|  166|Homo sapiens protein ( Homo sapiens ...   123   9e-28
BC039089-1|AAH39089.1|  612|Homo sapiens RPGRIP1 protein protein.      32   2.7  
AJ417067-1|CAD01135.1| 1286|Homo sapiens RPGR-interacting protei...    32   2.7  
AJ417048-1|CAD01136.1| 1286|Homo sapiens RPGR-interacting protei...    32   2.7  
AF260257-1|AAF91371.1|  902|Homo sapiens RPGR-interacting protei...    32   2.7  
AY424672-1|AAR06216.1|  123|Homo sapiens T-cell receptor beta ch...    30   8.3  

>BC020830-1|AAH20830.1|  166|Homo sapiens coiled-coil domain
           containing 12 protein.
          Length = 166

 Score =  123 bits (296), Expect = 9e-28
 Identities = 56/110 (50%), Positives = 84/110 (76%)
 Frame = +3

Query: 246 KFRSYKPQDEALQESKLNDAEPTVIEEEVKDLLEAGKEKVVLQDLDITSLAPRKPDWDLK 425
           + R+Y P+DE L++ ++  A+P  +EE+VK+ LEA K + V++++D+ +LAPRKPDWDLK
Sbjct: 58  RLRNYVPEDEDLKKRRVPQAKPVAVEEKVKEQLEAAKPEPVIEEVDLANLAPRKPDWDLK 117

Query: 426 RDVAKKLERLERKTQRAIAELIWDRLKHGNEDNLSAMITMTANRPTITDD 575
           RDVAKKLE+L+++TQRAIAELI +RLK G ED+L++ +     + T   D
Sbjct: 118 RDVAKKLEKLKKRTQRAIAELIRERLK-GQEDSLASAVDAATEQKTCDSD 166


>AK096749-1|BAC04857.1|  166|Homo sapiens protein ( Homo sapiens
           cDNA FLJ39430 fis, clone PROST2002489. ).
          Length = 166

 Score =  123 bits (296), Expect = 9e-28
 Identities = 56/110 (50%), Positives = 84/110 (76%)
 Frame = +3

Query: 246 KFRSYKPQDEALQESKLNDAEPTVIEEEVKDLLEAGKEKVVLQDLDITSLAPRKPDWDLK 425
           + R+Y P+DE L++ ++  A+P  +EE+VK+ LEA K + V++++D+ +LAPRKPDWDLK
Sbjct: 58  RLRNYVPEDEDLKKRRVPQAKPVAVEEKVKEQLEAAKPESVIEEVDLANLAPRKPDWDLK 117

Query: 426 RDVAKKLERLERKTQRAIAELIWDRLKHGNEDNLSAMITMTANRPTITDD 575
           RDVAKKLE+L+++TQRAIAELI +RLK G ED+L++ +     + T   D
Sbjct: 118 RDVAKKLEKLKKRTQRAIAELIRERLK-GQEDSLASAVDAATEQKTCDSD 166


>BC039089-1|AAH39089.1|  612|Homo sapiens RPGRIP1 protein protein.
          Length = 612

 Score = 31.9 bits (69), Expect = 2.7
 Identities = 23/74 (31%), Positives = 40/74 (54%)
 Frame = +3

Query: 240 KPKFRSYKPQDEALQESKLNDAEPTVIEEEVKDLLEAGKEKVVLQDLDITSLAPRKPDWD 419
           +PK +  K   + L E +++ AE T+  E+ +D+L   ++  V    ++ ++   K D D
Sbjct: 134 EPKNQEEKKLSQVLNELQVSHAETTLELEKTRDMLILQRKINVCYQEELEAMM-TKADND 192

Query: 420 LKRDVAKKLERLER 461
             RD  +KLERL R
Sbjct: 193 -NRDHKEKLERLTR 205


>AJ417067-1|CAD01135.1| 1286|Homo sapiens RPGR-interacting protein 1
           protein.
          Length = 1286

 Score = 31.9 bits (69), Expect = 2.7
 Identities = 23/74 (31%), Positives = 40/74 (54%)
 Frame = +3

Query: 240 KPKFRSYKPQDEALQESKLNDAEPTVIEEEVKDLLEAGKEKVVLQDLDITSLAPRKPDWD 419
           +PK +  K   + L E +++ AE T+  E+ +D+L   ++  V    ++ ++   K D D
Sbjct: 492 EPKNQEEKKLSQVLNELQVSHAETTLELEKTRDMLILQRKINVCYQEELEAMM-TKADND 550

Query: 420 LKRDVAKKLERLER 461
             RD  +KLERL R
Sbjct: 551 -NRDHKEKLERLTR 563


>AJ417048-1|CAD01136.1| 1286|Homo sapiens RPGR-interacting protein 1
           protein.
          Length = 1286

 Score = 31.9 bits (69), Expect = 2.7
 Identities = 23/74 (31%), Positives = 40/74 (54%)
 Frame = +3

Query: 240 KPKFRSYKPQDEALQESKLNDAEPTVIEEEVKDLLEAGKEKVVLQDLDITSLAPRKPDWD 419
           +PK +  K   + L E +++ AE T+  E+ +D+L   ++  V    ++ ++   K D D
Sbjct: 492 EPKNQEEKKLSQVLNELQVSHAETTLELEKTRDMLILQRKINVCYQEELEAMM-TKADND 550

Query: 420 LKRDVAKKLERLER 461
             RD  +KLERL R
Sbjct: 551 -NRDHKEKLERLTR 563


>AF260257-1|AAF91371.1|  902|Homo sapiens RPGR-interacting protein
           protein.
          Length = 902

 Score = 31.9 bits (69), Expect = 2.7
 Identities = 23/74 (31%), Positives = 40/74 (54%)
 Frame = +3

Query: 240 KPKFRSYKPQDEALQESKLNDAEPTVIEEEVKDLLEAGKEKVVLQDLDITSLAPRKPDWD 419
           +PK +  K   + L E +++ AE T+  E+ +D+L   ++  V    ++ ++   K D D
Sbjct: 108 EPKNQEEKKLSQVLNELQVSHAETTLELEKTRDMLILQRKINVCYQEELEAMM-TKADND 166

Query: 420 LKRDVAKKLERLER 461
             RD  +KLERL R
Sbjct: 167 -NRDHKEKLERLTR 179


>AY424672-1|AAR06216.1|  123|Homo sapiens T-cell receptor beta chain
           variable region protein.
          Length = 123

 Score = 30.3 bits (65), Expect = 8.3
 Identities = 21/52 (40%), Positives = 28/52 (53%)
 Frame = -2

Query: 439 LATSRLRSQSGFLGAKLVMSRSWRTTFSLPASNKSFTSSSITVGSASLSLDS 284
           L  S LR +SGF+  K  +SR   T  +L  SN S   SSI + S  L+ +S
Sbjct: 1   LQNSALRYESGFVIDKFPISRPNLTFSTLTVSNMSPEDSSIYLCSVELARNS 52


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,990,710
Number of Sequences: 237096
Number of extensions: 1678376
Number of successful extensions: 3909
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3789
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3905
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9701808132
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)