Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30658
(792 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC9B6.08 |clc1||clathrin light chain|Schizosaccharomyces pombe... 48 2e-06
SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr 3||... 29 0.76
SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces p... 29 1.0
SPBC1683.08 |ght4||hexose transporter Ght4 |Schizosaccharomyces ... 29 1.0
SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|ch... 28 1.8
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc... 28 1.8
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po... 27 4.1
SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces pombe... 27 4.1
SPBC16A3.07c |nrm1||negative regulator of MBF|Schizosaccharomyce... 26 5.4
SPAC57A10.11c |tim40||TIM22 inner membrane protein import comple... 26 7.1
SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit Mts4|... 26 7.1
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc... 25 9.4
SPAC26F1.09 |gyp51||GTPase activating protein Gyp51 |Schizosacch... 25 9.4
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos... 25 9.4
>SPBC9B6.08 |clc1||clathrin light chain|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 229
Score = 48.0 bits (109), Expect = 2e-06
Identities = 46/212 (21%), Positives = 82/212 (38%), Gaps = 15/212 (7%)
Frame = +2
Query: 152 MDDFGDSFVEPEVDPA---ADFLAREQNQLAGLEDELETSAPPPAISTSTNGFDD----F 310
++DF D V VD + DFL RE+ L + ET A+ N + F
Sbjct: 7 LEDFDDGLVTAPVDDSKNNTDFLEREKLALGEDAGQFETPEDKDALLNFENDSEAEQTRF 66
Query: 311 VE--VPSASAFDANGLLD--DAP-LGSTPTTVFKQEREEPEKIKIWREEQXXXXXXXXXX 475
+ P + A+G AP +G + E +PE ++ W+E+Q
Sbjct: 67 EQNFPPIDAEMQASGTFSAPKAPYMGQAEVHPPEDESGDPEPVRKWKEDQMKRIQERDES 126
Query: 476 XXXXXXXMLQIAKKELEDWYKSHEEQISKTKXXXXXXXXXXXXGSESSVEEGNEWARVSE 655
++ A+K ++D+Y++ ++ K +ES W R+ +
Sbjct: 127 SKKLRESNIEKARKAIDDFYENFNDKRDKVIAKSRKEQEKLLEENESKSTGTTSWERILK 186
Query: 656 LCDFGPR---RGRDVARLRSIVLQLKQAGSRP 742
L D + GR R R +++ L + + P
Sbjct: 187 LIDLSDKPEAHGRSTERFRELLISLAKDSNAP 218
>SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 465
Score = 29.1 bits (62), Expect = 0.76
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -2
Query: 614 FQILELVLALHSCWQL*FWKSVLHVICTS 528
F +L L A H C + FWK++ +CT+
Sbjct: 411 FLVLHLTQAFHVCPSVTFWKTLFMSLCTA 439
>SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 555
Score = 28.7 bits (61), Expect = 1.0
Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Frame = -3
Query: 403 FLFEYCC-WSGSQWSIIQQTVSIK 335
FLF YCC W W I+ +T I+
Sbjct: 375 FLFSYCCSWGPMGWVIVGETFPIR 398
>SPBC1683.08 |ght4||hexose transporter Ght4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 557
Score = 28.7 bits (61), Expect = 1.0
Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Frame = -3
Query: 403 FLFEYCC-WSGSQWSIIQQTVSIK 335
FLF YCC W W I+ +T I+
Sbjct: 375 FLFSYCCSWGPMGWVIVGETFPIR 398
>SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 979
Score = 27.9 bits (59), Expect = 1.8
Identities = 18/59 (30%), Positives = 30/59 (50%)
Frame = +2
Query: 188 VDPAADFLAREQNQLAGLEDELETSAPPPAISTSTNGFDDFVEVPSASAFDANGLLDDA 364
V+ D + E+N + E+ETS PPA+S ST ++ + S++ + L D A
Sbjct: 454 VEVHTDANSPEENNTPVTKKEVETS-KPPAVSGSTPPVNEAAVIESSNTLEKEPLSDVA 511
>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1576
Score = 27.9 bits (59), Expect = 1.8
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = -3
Query: 196 WIDLRFNETVSKIIHFQISFWNKSINRMRVDFQHS 92
W++ N+TV++II ++S+N M VDF+ S
Sbjct: 621 WVETEANDTVTEIISSDSESLSQSLN-MAVDFRQS 654
>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2812
Score = 26.6 bits (56), Expect = 4.1
Identities = 10/34 (29%), Positives = 17/34 (50%)
Frame = +2
Query: 239 LEDELETSAPPPAISTSTNGFDDFVEVPSASAFD 340
L+D PP ++ N D+ +P+ S+FD
Sbjct: 2417 LKDAANYGLPPITMNVKVNDTGDYSNIPTVSSFD 2450
>SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 871
Score = 26.6 bits (56), Expect = 4.1
Identities = 13/49 (26%), Positives = 24/49 (48%)
Frame = +2
Query: 254 ETSAPPPAISTSTNGFDDFVEVPSASAFDANGLLDDAPLGSTPTTVFKQ 400
E P S + GF+D+V P++ + ++ L S+P+T + Q
Sbjct: 348 EAGGSPSKSSPTRPGFNDYVNRPTSVMPSLSNMIVSPDLDSSPSTDWNQ 396
>SPBC16A3.07c |nrm1||negative regulator of MBF|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 342
Score = 26.2 bits (55), Expect = 5.4
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +2
Query: 257 TSAPPPAISTSTNGFDDFVEVPSASAFDANGLLDDAPLGSTPTT 388
+S PP++ S N P+ S +D NGL P+GS T
Sbjct: 187 SSGKPPSLHLSGNRRLSMGS-PTKSIYDQNGLTTPRPIGSDDLT 229
>SPAC57A10.11c |tim40||TIM22 inner membrane protein import complex
subunit Tim40|Schizosaccharomyces pombe|chr 1|||Manual
Length = 313
Score = 25.8 bits (54), Expect = 7.1
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Frame = -2
Query: 212 QGNLLLDRPQVQRNCLQNHP--FSNKL--LEQIN*QNESRFSTLFDENDESLVPNSCSPG 45
+G LD+ Q + C Q HP + + + E+ + + + ST DEN++ P S +
Sbjct: 229 KGMECLDKFQAMQACFQKHPEIYQDMVGESEEEDAETNEKPSTTSDENNQPQSPPSDNAS 288
Query: 44 DP 39
+P
Sbjct: 289 NP 290
>SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit
Mts4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 891
Score = 25.8 bits (54), Expect = 7.1
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = -2
Query: 647 PGPIHFLPPHYFQILEL 597
P P+ FL PHYF ++++
Sbjct: 94 PKPLKFLRPHYFTLVKI 110
>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1016
Score = 25.4 bits (53), Expect = 9.4
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +2
Query: 272 PAISTSTNGFDDFVEVPSASA 334
P I +ST +DFVEVP SA
Sbjct: 203 PQIFSSTLYINDFVEVPGTSA 223
>SPAC26F1.09 |gyp51||GTPase activating protein Gyp51
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1031
Score = 25.4 bits (53), Expect = 9.4
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -2
Query: 518 LSWLSEAFLASFVLPQHLSLLIFSF 444
+SW++ A L PQ +LL+F F
Sbjct: 705 MSWIAGALLMHLPAPQAFALLVFLF 729
>SPBC17D11.05 |tif32||translation initiation factor
eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 932
Score = 25.4 bits (53), Expect = 9.4
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +1
Query: 424 QNMARRTKEKIRRERC*GRTKEARNASDSQERTGGL 531
+ + +R E+IRRE+ R EA+ ++ + GGL
Sbjct: 606 EEINKRNAERIRREKEAIRINEAKKLAEELKAKGGL 641
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,153,424
Number of Sequences: 5004
Number of extensions: 65241
Number of successful extensions: 207
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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