Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30658
(792 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0038 - 15778446-15778577,15778685-15779020,15779106-157792... 32 0.60
09_06_0056 - 20561645-20561920,20562024-20562611,20562698-205630... 31 1.0
07_03_1762 - 29299328-29299437,29299782-29299871,29300487-293012... 30 1.8
06_03_1369 + 29620958-29621030,29622421-29622452,29622538-296225... 30 1.8
12_02_0635 - 21430245-21431156 28 7.4
07_03_0234 + 15561003-15561482,15562495-15562590,15562663-15562758 28 7.4
05_06_0150 - 25994562-25995980 28 7.4
05_06_0149 - 25991761-25993181,25993246-25993324 28 7.4
01_06_0268 - 28026512-28026682,28026782-28026919,28027151-280273... 28 7.4
08_01_0081 - 574119-575204,575794-576191,576321-576382,576581-57... 28 9.8
07_01_0866 - 7195305-7195756,7197171-7197447 28 9.8
04_04_1634 + 34937087-34937198,34937652-34937790,34938263-349383... 28 9.8
>06_03_0038 - 15778446-15778577,15778685-15779020,15779106-15779225,
15779280-15779765,15779861-15779994,15780111-15780230,
15784881-15785018,15785404-15786079,15786179-15786340,
15786424-15786618,15786839-15787084,15787758-15787952
Length = 979
Score = 31.9 bits (69), Expect = 0.60
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 7/76 (9%)
Frame = +2
Query: 68 RGSHHF--RQRVLKIYSHSVN*FVPKAYLKMDDFGDSFVE-PEVDPAAD----FLAREQN 226
+ HH+ Q+VLK S F+PK + K ++ FV+ P++ P ++ ++ R
Sbjct: 862 QSQHHYPLAQKVLKRLSDGFQSFMPKVFKKFGNYHREFVKCPKMVPCSNDCAVYVIRYME 921
Query: 227 QLAGLEDELETSAPPP 274
+ G D+L PP
Sbjct: 922 RYQGNPDKLADDFQPP 937
>09_06_0056 -
20561645-20561920,20562024-20562611,20562698-20563055,
20563149-20563483,20563593-20563633,20563722-20563932,
20564289-20564348,20564432-20564457,20565066-20565264
Length = 697
Score = 31.1 bits (67), Expect = 1.0
Identities = 24/92 (26%), Positives = 39/92 (42%), Gaps = 6/92 (6%)
Frame = +3
Query: 522 WRTGTNHMKNRFPKLKLPTGMQSE-HKLEDLKVVWRKEMNGPGFLSFVTLDPVEEGMWHA 698
W G N + K K TG+ + + + +V+W+ PG L+F L + WH
Sbjct: 579 WAYGMNIFDLKEWKKKDITGIYHKWQSMNEDRVLWKLGTLPPGLLTFYKLTHPLDKSWHV 638
Query: 699 YG---QLCFSSSKLDLAQTTHH--VLLKWLEI 779
G S++D A H+ + WLE+
Sbjct: 639 LGLGYNPSIDRSEIDNAAVVHYNGNMKPWLEL 670
>07_03_1762 -
29299328-29299437,29299782-29299871,29300487-29301291,
29301956-29303278
Length = 775
Score = 30.3 bits (65), Expect = 1.8
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Frame = +2
Query: 155 DDFGDSFVEPEVDPAADFLAREQNQLAGLEDE---LETSAPPP 274
++ GD EPE + ADF+ E+ + LEDE E AP P
Sbjct: 56 EEGGDDEAEPEDESDADFVGDEEEEEEDLEDEDDLEEVKAPRP 98
>06_03_1369 +
29620958-29621030,29622421-29622452,29622538-29622598,
29622695-29622711,29622916-29623250,29623329-29623686,
29623784-29624371,29624664-29624939
Length = 579
Score = 30.3 bits (65), Expect = 1.8
Identities = 24/92 (26%), Positives = 38/92 (41%), Gaps = 6/92 (6%)
Frame = +3
Query: 522 WRTGTNHMKNRFPKLKLPTGMQSE-HKLEDLKVVWRKEMNGPGFLSFVTLDPVEEGMWHA 698
W G N K K TG+ + + + +++W+ PG L+F L + WH
Sbjct: 461 WAYGMNMFDLEEWKKKDITGIYHKWQNMNENRLLWKLGTLPPGLLTFYKLTHPLDKSWHV 520
Query: 699 YG---QLCFSSSKLDLAQTTHH--VLLKWLEI 779
G S++D A H+ + WLEI
Sbjct: 521 LGLGYNPSIERSEIDNAAVIHYNGNMKPWLEI 552
>12_02_0635 - 21430245-21431156
Length = 303
Score = 28.3 bits (60), Expect = 7.4
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = +1
Query: 670 TPSRK--GCGTLTVNCASAQASWISPKLPITC 759
TP R GC LT+ C+ S+ SP P++C
Sbjct: 272 TPPRPYVGCPRLTIPCSCENQSFKSPAKPLSC 303
>07_03_0234 + 15561003-15561482,15562495-15562590,15562663-15562758
Length = 223
Score = 28.3 bits (60), Expect = 7.4
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = -1
Query: 702 RKRATSLPRRGPKSQSSETRAHSFPSSTLLSDPRACARS 586
R RAT+ P+ S++ +AHSF S P A AR+
Sbjct: 3 RPRATTAAASRPRRASTKPKAHSFLSPVAPPPPSARARA 41
>05_06_0150 - 25994562-25995980
Length = 472
Score = 28.3 bits (60), Expect = 7.4
Identities = 16/62 (25%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = +3
Query: 39 WIPRAAGIRHEALIIFVKEC-*KSTLILLIDLFQKLI*KWMILETVSLNLRSIQQQISLP 215
W+P+A ++HEA+ FV C STL ++ + W + ++N + +++ +
Sbjct: 339 WVPQAEVVQHEAVGAFVTHCGWNSTLEAIMSALPMIC--WPLYAEQAMNKVIMVEEMKIA 396
Query: 216 VS 221
VS
Sbjct: 397 VS 398
>05_06_0149 - 25991761-25993181,25993246-25993324
Length = 499
Score = 28.3 bits (60), Expect = 7.4
Identities = 16/62 (25%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = +3
Query: 39 WIPRAAGIRHEALIIFVKEC-*KSTLILLIDLFQKLI*KWMILETVSLNLRSIQQQISLP 215
W+P+A ++HEA+ FV C STL ++ + W + ++N + +++ +
Sbjct: 366 WVPQAEVVQHEAVGAFVTHCGWNSTLEAIMSALPMIC--WPLYAEQAMNKVIMVEEMKIA 423
Query: 216 VS 221
VS
Sbjct: 424 VS 425
>01_06_0268 -
28026512-28026682,28026782-28026919,28027151-28027366,
28027488-28027564,28027845-28028448
Length = 401
Score = 28.3 bits (60), Expect = 7.4
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Frame = -2
Query: 686 PFLDGVQSHKAQKPGPIHFLPPHYFQILELVLALHSCWQL*F----WKSVLHVICTSPPV 519
P L + + ++ GP+H LPP + LAL + W L + W +V+ V+C +
Sbjct: 100 PALPSSAAGRRRREGPLHALPPRP-PLAAGALAL-AAWALSYLVLAWHTVVDVVCFTLTA 157
Query: 518 LSWLSEA 498
S + +A
Sbjct: 158 ASLMGDA 164
>08_01_0081 -
574119-575204,575794-576191,576321-576382,576581-576653,
576754-576824,576961-577148,577230-577377,577465-577503,
577601-577656,577745-577798,577900-578003,578117-578217,
578726-578796,578912-578968,579306-579422,579653-579682
Length = 884
Score = 27.9 bits (59), Expect = 9.8
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = -2
Query: 557 KSVLHVICTSPPVLSW 510
K+VLH+ C PP +SW
Sbjct: 10 KAVLHMDCEKPPAISW 25
>07_01_0866 - 7195305-7195756,7197171-7197447
Length = 242
Score = 27.9 bits (59), Expect = 9.8
Identities = 20/65 (30%), Positives = 27/65 (41%)
Frame = -1
Query: 756 RDG*FGRDPACLS*STIDRKRATSLPRRGPKSQSSETRAHSFPSSTLLSDPRACARSAFL 577
R+G DP LS T D + + RR P RA S + + P C +SA
Sbjct: 6 REGKRSPDPPLLSPPTADPRERETKRRRDPGVGGGSARAASTAWNRCMRRPCRCPQSATA 65
Query: 576 LAALV 562
L L+
Sbjct: 66 LLHLL 70
>04_04_1634 +
34937087-34937198,34937652-34937790,34938263-34938334,
34938414-34938546,34938591-34938730,34939478-34939585,
34939650-34939720,34940297-34940545,34940618-34940823,
34940894-34941026,34941099-34941101,34941136-34941293,
34941420-34941683,34941869-34942114
Length = 677
Score = 27.9 bits (59), Expect = 9.8
Identities = 15/54 (27%), Positives = 27/54 (50%)
Frame = +2
Query: 89 QRVLKIYSHSVN*FVPKAYLKMDDFGDSFVEPEVDPAADFLAREQNQLAGLEDE 250
Q ++++ S + N P L + DF +F+ ++ P +L R Q L+DE
Sbjct: 193 QNLVQLRSTAHNGLCPSPRLNVGDFSYNFLVGKIPPCLKYLPRSSFQGNCLQDE 246
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,149,033
Number of Sequences: 37544
Number of extensions: 452963
Number of successful extensions: 1557
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1467
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1554
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2138915688
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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