Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30658
(792 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U53151-1|AAB37069.1| 226|Caenorhabditis elegans Clathrin light ... 54 9e-08
U10438-1|AAA19083.3| 524|Caenorhabditis elegans Hypothetical pr... 37 0.019
DQ340624-1|ABC65812.1| 524|Caenorhabditis elegans chondroitin p... 37 0.019
U13644-9|AAB52680.3| 492|Caenorhabditis elegans Cell death abno... 30 1.7
AF061513-1|AAC24362.1| 492|Caenorhabditis elegans candidate ada... 30 1.7
Z77661-8|CAB01189.1| 438|Caenorhabditis elegans Hypothetical pr... 30 2.2
Z81112-6|CAB03277.1| 673|Caenorhabditis elegans Hypothetical pr... 29 3.8
Z77136-10|CAB00887.1| 673|Caenorhabditis elegans Hypothetical p... 29 3.8
Z70271-3|CAA94234.1| 358|Caenorhabditis elegans Hypothetical pr... 29 5.0
U80439-9|AAO38675.1| 661|Caenorhabditis elegans Hypothetical pr... 28 6.7
U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical pr... 28 6.7
U55373-1|AAC25894.1| 1829|Caenorhabditis elegans Lethal protein ... 28 8.8
U23178-2|AAK68302.1| 460|Caenorhabditis elegans Hypothetical pr... 28 8.8
AF308445-1|AAG29838.1| 1829|Caenorhabditis elegans LET-418 protein. 28 8.8
>U53151-1|AAB37069.1| 226|Caenorhabditis elegans Clathrin light
chain protein 1 protein.
Length = 226
Score = 54.4 bits (125), Expect = 9e-08
Identities = 61/223 (27%), Positives = 90/223 (40%), Gaps = 42/223 (18%)
Frame = +2
Query: 191 DPAADFLAREQNQLAGLE-----------DELETSAPPPAISTSTNGF----DDFVEV-- 319
DP ADFLAREQN A + D E AP PA+ D+ V
Sbjct: 3 DPVADFLAREQNLFADFDGAPPAAAAANPDAPEADAPAPALDDDFGDLQIAGDEPPPVVH 62
Query: 320 PSASAFDANGLLDD---APL-------------------GST-PTTVFKQ-EREEPEKIK 427
P+ S D +GL+DD AP GS P+ + R E EKI+
Sbjct: 63 PTDSGVDLDGLVDDNAAAPAIVVPAVEPMVNGNHSASSGGSKGPSPILSTVPRIEAEKIR 122
Query: 428 IWREEQXXXXXXXXXXXXXXXXXMLQIAKKELEDWYKSHEEQISKTKXXXXXXXXXXXXG 607
+W+ +Q + AKKELE+WYK E+ + +
Sbjct: 123 LWKAQQEQLLSKKDEAEEKKKIELRANAKKELEEWYKQREKTLQLSHDENLKNEKSNQEL 182
Query: 608 SESSVEEGNEWARVSELCD-FGPRRGRDVARLRSIVLQLKQAG 733
+ +W V++L D + G+D++RL++++ LK AG
Sbjct: 183 FAKQQDGDAQWETVNKLVDQQKSKSGKDLSRLKTLLAGLKHAG 225
>U10438-1|AAA19083.3| 524|Caenorhabditis elegans Hypothetical
protein B0280.5 protein.
Length = 524
Score = 36.7 bits (81), Expect = 0.019
Identities = 18/50 (36%), Positives = 25/50 (50%)
Frame = +2
Query: 218 EQNQLAGLEDELETSAPPPAISTSTNGFDDFVEVPSASAFDANGLLDDAP 367
EQNQ GL++ L P + + NG D E PS+ F+ L+ D P
Sbjct: 399 EQNQCVGLDNGLHAIGCSPRVLSCQNGHVDIFECPSSLVFNDQSLICDYP 448
>DQ340624-1|ABC65812.1| 524|Caenorhabditis elegans chondroitin
proteoglycan-2 protein.
Length = 524
Score = 36.7 bits (81), Expect = 0.019
Identities = 18/50 (36%), Positives = 25/50 (50%)
Frame = +2
Query: 218 EQNQLAGLEDELETSAPPPAISTSTNGFDDFVEVPSASAFDANGLLDDAP 367
EQNQ GL++ L P + + NG D E PS+ F+ L+ D P
Sbjct: 399 EQNQCVGLDNGLHAIGCSPRVLSCQNGHVDIFECPSSLVFNDQSLICDYP 448
>U13644-9|AAB52680.3| 492|Caenorhabditis elegans Cell death
abnormality protein 6 protein.
Length = 492
Score = 30.3 bits (65), Expect = 1.7
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = +2
Query: 182 PEVDPAADFLAREQNQLAGLEDELETSAPPPAISTSTNGFDD 307
P V P + + +N AGL D LE + PA +N FDD
Sbjct: 330 PPVAPRRNPVVSPKNSTAGLLDGLELGSAEPAKKAPSNIFDD 371
>AF061513-1|AAC24362.1| 492|Caenorhabditis elegans candidate
adaptor protein CED-6 protein.
Length = 492
Score = 30.3 bits (65), Expect = 1.7
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = +2
Query: 182 PEVDPAADFLAREQNQLAGLEDELETSAPPPAISTSTNGFDD 307
P V P + + +N AGL D LE + PA +N FDD
Sbjct: 330 PPVAPRRNPVVSPKNSTAGLLDGLELGSAEPAKKAPSNIFDD 371
>Z77661-8|CAB01189.1| 438|Caenorhabditis elegans Hypothetical
protein F40G12.10 protein.
Length = 438
Score = 29.9 bits (64), Expect = 2.2
Identities = 13/45 (28%), Positives = 28/45 (62%)
Frame = -1
Query: 711 TIDRKRATSLPRRGPKSQSSETRAHSFPSSTLLSDPRACARSAFL 577
++ ++R + L RR KS+S+ + + P+S L +DP++ + F+
Sbjct: 28 SMSKERGSELSRRPQKSRSNSKQKATGPTSALPTDPKSKIDTTFM 72
>Z81112-6|CAB03277.1| 673|Caenorhabditis elegans Hypothetical
protein ZC376.3 protein.
Length = 673
Score = 29.1 bits (62), Expect = 3.8
Identities = 20/49 (40%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
Frame = +3
Query: 516 KNWRTGTNHMKNRFPKLKLPTGM-----QSEHKLEDLKVVWRKEMNGPG 647
K TG + +F K+ L M +SE KLE LK WRK NG G
Sbjct: 564 KGVATGPDKTFEQFEKMLLEREMFLKTLKSERKLELLKEKWRKIRNGGG 612
>Z77136-10|CAB00887.1| 673|Caenorhabditis elegans Hypothetical
protein ZC376.3 protein.
Length = 673
Score = 29.1 bits (62), Expect = 3.8
Identities = 20/49 (40%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
Frame = +3
Query: 516 KNWRTGTNHMKNRFPKLKLPTGM-----QSEHKLEDLKVVWRKEMNGPG 647
K TG + +F K+ L M +SE KLE LK WRK NG G
Sbjct: 564 KGVATGPDKTFEQFEKMLLEREMFLKTLKSERKLELLKEKWRKIRNGGG 612
>Z70271-3|CAA94234.1| 358|Caenorhabditis elegans Hypothetical
protein W08D2.6 protein.
Length = 358
Score = 28.7 bits (61), Expect = 5.0
Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Frame = +2
Query: 215 REQNQLAGLEDELE-TSAPPPAISTSTNGFDDFVEVPSASAFDANGLLDDAPLGSTPTT 388
R + G DE + APPP S+ G+D+ PSA A D AP G PT+
Sbjct: 80 RARRPARGAYDEGDYKEAPPPTSYPSSGGYDE----PSAPAHDT---APQAPAGPAPTS 131
>U80439-9|AAO38675.1| 661|Caenorhabditis elegans Hypothetical
protein C01G8.9b protein.
Length = 661
Score = 28.3 bits (60), Expect = 6.7
Identities = 18/49 (36%), Positives = 23/49 (46%)
Frame = +2
Query: 218 EQNQLAGLEDELETSAPPPAISTSTNGFDDFVEVPSASAFDANGLLDDA 364
++ A L DE S PP + +NGFD S S+ NG L DA
Sbjct: 606 QKRSAAALIDEQSRSPPPAKRAHLSNGFD-----KSKSSVSTNGTLGDA 649
>U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical protein
C01G8.9a protein.
Length = 1724
Score = 28.3 bits (60), Expect = 6.7
Identities = 18/49 (36%), Positives = 23/49 (46%)
Frame = +2
Query: 218 EQNQLAGLEDELETSAPPPAISTSTNGFDDFVEVPSASAFDANGLLDDA 364
++ A L DE S PP + +NGFD S S+ NG L DA
Sbjct: 1669 QKRSAAALIDEQSRSPPPAKRAHLSNGFD-----KSKSSVSTNGTLGDA 1712
>U55373-1|AAC25894.1| 1829|Caenorhabditis elegans Lethal protein 418
protein.
Length = 1829
Score = 27.9 bits (59), Expect = 8.8
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Frame = +2
Query: 242 EDELETSAP-PPAISTSTNGFDDFVEVPSASAFDANGLLDDAPLGSTPTTVFKQ-EREEP 415
+DE + SA PP +S N DD +VPS SA A + + + P + Q +EP
Sbjct: 1768 DDETQDSAEAPPVLSAEVNS-DDSNDVPSTSA--AAAVSSETAADAEPASAEDQAPTDEP 1824
Query: 416 EKIK 427
E ++
Sbjct: 1825 EPME 1828
>U23178-2|AAK68302.1| 460|Caenorhabditis elegans Hypothetical
protein F08B1.3 protein.
Length = 460
Score = 27.9 bits (59), Expect = 8.8
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = -1
Query: 369 NGASSNRPLASNADALGTSTKSSNPFVDV 283
NG+ +NR ++ + D GT T SS+P + +
Sbjct: 415 NGSRTNRSVSCSPDECGTLTDSSDPHLTI 443
>AF308445-1|AAG29838.1| 1829|Caenorhabditis elegans LET-418 protein.
Length = 1829
Score = 27.9 bits (59), Expect = 8.8
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Frame = +2
Query: 242 EDELETSAP-PPAISTSTNGFDDFVEVPSASAFDANGLLDDAPLGSTPTTVFKQ-EREEP 415
+DE + SA PP +S N DD +VPS SA A + + + P + Q +EP
Sbjct: 1768 DDETQDSAEAPPVLSAEVNS-DDSNDVPSTSA--AAAVSSETAADAEPASAEDQAPTDEP 1824
Query: 416 EKIK 427
E ++
Sbjct: 1825 EPME 1828
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,672,046
Number of Sequences: 27780
Number of extensions: 380177
Number of successful extensions: 1449
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1309
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1448
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1924757034
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -