Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30657
(697 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom... 32 0.090
SPBC119.12 |||Golgi matrix protein |Schizosaccharomyces pombe|ch... 30 0.36
SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual 29 0.48
SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein Rpp1-2|S... 29 0.84
SPBC8D2.14c |sed5||SNARE Sed5 |Schizosaccharomyces pombe|chr 2||... 27 1.9
SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1 ... 27 2.6
SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity fac... 27 2.6
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 27 2.6
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac... 27 3.4
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||... 25 7.8
SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 25 7.8
SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit Cdc21... 25 7.8
>SPBC3F6.05 |rga1||GTPase activating protein
Rga1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1150
Score = 31.9 bits (69), Expect = 0.090
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +3
Query: 531 VSGKRKCSHCGEELGRGAAMIIESLSLCYHVWCFRCGVCGA 653
VS + C+ CG+ + + + +L YH+ CFRC C +
Sbjct: 110 VSSSKICASCGQVI---SGQYVRALGNIYHLECFRCHDCNS 147
>SPBC119.12 |||Golgi matrix protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 401
Score = 29.9 bits (64), Expect = 0.36
Identities = 24/93 (25%), Positives = 40/93 (43%), Gaps = 3/93 (3%)
Frame = +3
Query: 309 ARTRKPYNYNQHWLIQEAEHRRIEEQRSRLRTAQRHSYHQDVPNTLHNTAPLSNSHQFLA 488
A+ RK + L E ++ + + TAQ S QD+ + A L +Q L+
Sbjct: 105 AQNRKRIQELEKSLGDAEEALKLSNEETVTLTAQVESLTQDITDLRQQNASLVEENQLLS 164
Query: 489 QEVK---RTPREEKLLSVSGKRKCSHCGEELGR 578
+ K R R+E + S + + C E+L R
Sbjct: 165 TQSKQWERRARDEHEMQESLAVRLADCEEQLAR 197
>SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 29.5 bits (63), Expect = 0.48
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = +3
Query: 615 YHVWCFRCGVCGAALGD 665
YH C+ CG C A LGD
Sbjct: 397 YHSQCWTCGACNALLGD 413
>SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein
Rpp1-2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 28.7 bits (61), Expect = 0.84
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +2
Query: 455 GATEQQPSVSGAGSETDAARGEASQRQREEE 547
G+ P+ GAG+ AA GEA+ +++EE
Sbjct: 63 GSAAAAPAAGGAGAPAAAAGGEAAAEEQKEE 93
>SPBC8D2.14c |sed5||SNARE Sed5 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 27.5 bits (58), Expect = 1.9
Identities = 16/58 (27%), Positives = 27/58 (46%)
Frame = +3
Query: 375 IEEQRSRLRTAQRHSYHQDVPNTLHNTAPLSNSHQFLAQEVKRTPREEKLLSVSGKRK 548
+ + RSRLRT + T H + + Q +A ++ +T + + LS KRK
Sbjct: 14 VTKTRSRLRTTTANQAVGGPDQTKHQKSEFTRIAQKIANQINQTGEKLQKLSQLAKRK 71
>SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 767
Score = 27.1 bits (57), Expect = 2.6
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -2
Query: 291 WT*AWAWEPRLKPVKCV*SSDGRC 220
W AW P+++PV+ DGRC
Sbjct: 174 WLYLEAWMPKIEPVRVEDELDGRC 197
>SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity factor
complex subunit, Fip1 homolog |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 344
Score = 27.1 bits (57), Expect = 2.6
Identities = 25/96 (26%), Positives = 35/96 (36%), Gaps = 9/96 (9%)
Frame = +2
Query: 305 ASSHQETVQLQPALAHTGSGTP---------QDRRTKESTADCPASLVPPGRAQHAPQHG 457
ASS+ T H+G+ TP RR ES A+ P G P H
Sbjct: 227 ASSNYNTTHTSGGGVHSGAATPNAYVNNNPSSSRRESESPANSPNITSSAGMTHAQPTHN 286
Query: 458 ATEQQPSVSGAGSETDAARGEASQRQREEEMFSLRR 565
T +GA + +A+R ++ S RR
Sbjct: 287 PTSSYG--NGASTNYNASRPPSNHPHSSNYPSSSRR 320
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 27.1 bits (57), Expect = 2.6
Identities = 14/41 (34%), Positives = 18/41 (43%)
Frame = +1
Query: 262 ARLPRPSSCPTVNGCKLAPGNRTTTTSTGSYRKRNTAG*KN 384
A+ P+P P V KLAP T+ +T Y N N
Sbjct: 32 AQNPQPQWEPPVENLKLAPPPGATSVNTAVYNNNNNTSAAN 72
>SPAC23C4.02 |crn1||actin binding protein, coronin
Crn1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 26.6 bits (56), Expect = 3.4
Identities = 16/64 (25%), Positives = 33/64 (51%)
Frame = +2
Query: 47 PTASSAAETEKPRIHRKRDHYEKQSSAVRRGVCECGTQRGTPEIQAASPARRCRSDQRHL 226
PT SA++ E+P R D+++K+ + + + ++ P+ A+SP D +
Sbjct: 455 PTTPSASKVEEPSKKRDEDNHQKEETVTQPKREKTPVEKSFPK-PASSPV-TFSEDVKKE 512
Query: 227 PSDD 238
PS++
Sbjct: 513 PSEE 516
>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1315
Score = 25.4 bits (53), Expect = 7.8
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = -3
Query: 401 PQSTPLFFYPAVFRFLYEPVLVVVVRFPGASLHPFTVG 288
P+ T FY FRF+ ++ ++ F +S++ T+G
Sbjct: 520 PKPTNFSFYRDSFRFITAMFIIALIGFVFSSINLLTLG 557
>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 647
Score = 25.4 bits (53), Expect = 7.8
Identities = 42/173 (24%), Positives = 57/173 (32%), Gaps = 13/173 (7%)
Frame = +2
Query: 56 SSAAETEKPRIHRKRDHYEKQSSAVRRGVCECGTQRGTPEIQA--ASPARRCR--SDQRH 223
S T R+ K D + V R G + TP A A ++ R S Q
Sbjct: 461 SKETTTASKRVS-KHDKASAEKHKVARKPSSTGQEPTTPSTPAKSAQSSKHARRPSKQAS 519
Query: 224 LPSDD*THFT----GFKRGSHAQAHVQL*MDA--SSHQETVQLQPALAHTGSGTPQDRRT 385
PS T G K A A + D S H + GS T +
Sbjct: 520 APSSPGTTSAAVPGGKKSAIEAAAPIPTSADTVESKHAAGSGSATTIPSPGSATTKPTPG 579
Query: 386 KESTADCPASLVPP---GRAQHAPQHGATEQQPSVSGAGSETDAARGEASQRQ 535
+T P S G + AP GAT + + G A GEA+ ++
Sbjct: 580 SATTKPTPVSATEEHAAGTTKPAPAAGATATAENETADGKAQTATDGEAAPKK 632
>SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit
Cdc21|Schizosaccharomyces pombe|chr 3|||Manual
Length = 911
Score = 25.4 bits (53), Expect = 7.8
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = -2
Query: 198 RAGEAAWISGVPRCVPHSHTPR-RTALDCF 112
RAG+ ++G+ RCVP PR RT F
Sbjct: 405 RAGDRIEVTGIFRCVPVRLNPRMRTVKSLF 434
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,576,070
Number of Sequences: 5004
Number of extensions: 51097
Number of successful extensions: 214
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 214
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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