Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30657
(697 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U00045-3|AAL02502.1| 868|Caenorhabditis elegans Temporarily ass... 91 5e-19
U00045-2|AAL02501.1| 1004|Caenorhabditis elegans Temporarily ass... 91 5e-19
U00045-1|AAM29684.1| 1099|Caenorhabditis elegans Temporarily ass... 91 5e-19
Z49887-3|CAC70079.1| 639|Caenorhabditis elegans Hypothetical pr... 36 0.028
Z49887-2|CAA90057.1| 625|Caenorhabditis elegans Hypothetical pr... 36 0.028
AF068867-1|AAC35506.1| 639|Caenorhabditis elegans putative acti... 36 0.028
AF078157-9|AAG24075.3| 425|Caenorhabditis elegans Hypothetical ... 33 0.15
U02289-1|AAA18934.1| 1439|Caenorhabditis elegans GTPase-activati... 32 0.45
L16687-1|AAK71357.2| 1317|Caenorhabditis elegans Hypothetical pr... 32 0.45
Z99279-1|CAB16496.4| 598|Caenorhabditis elegans Hypothetical pr... 31 0.79
Z81082-3|CAB03095.2| 603|Caenorhabditis elegans Hypothetical pr... 31 1.0
Z81055-4|CAB02893.1| 824|Caenorhabditis elegans Hypothetical pr... 31 1.0
Z47811-3|CAA87787.2| 723|Caenorhabditis elegans Hypothetical pr... 30 1.4
U41624-2|AAF99943.2| 351|Caenorhabditis elegans C.elegans homeo... 30 1.4
AF489839-1|AAN09795.1| 723|Caenorhabditis elegans lim and trans... 30 1.4
AF244368-1|AAF77181.1| 351|Caenorhabditis elegans LIM homeobox ... 30 1.4
AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ... 30 1.4
Z81481-5|CAB63436.1| 405|Caenorhabditis elegans Hypothetical pr... 30 1.8
U52003-7|AAM97989.1| 555|Caenorhabditis elegans Hypothetical pr... 30 1.8
AF003136-3|AAO38651.1| 352|Caenorhabditis elegans Hypothetical ... 30 1.8
AF003136-2|AAK93851.1| 468|Caenorhabditis elegans Hypothetical ... 30 1.8
Z81482-5|CAB03956.3| 409|Caenorhabditis elegans Hypothetical pr... 29 2.4
U72211-1|AAB97099.1| 409|Caenorhabditis elegans putative transc... 29 2.4
U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna b... 29 3.2
U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type ribon... 29 3.2
EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA... 29 3.2
AL023493-2|CAD44137.1| 909|Caenorhabditis elegans Hypothetical ... 29 4.2
AL023493-1|CAA18898.1| 947|Caenorhabditis elegans Hypothetical ... 29 4.2
AF039720-7|AAB96695.1| 131|Caenorhabditis elegans Hypothetical ... 29 4.2
Z79694-1|CAB01959.1| 303|Caenorhabditis elegans Hypothetical pr... 28 5.5
Z78540-4|CAB01734.2| 624|Caenorhabditis elegans Hypothetical pr... 28 5.5
U42847-4|AAF23186.1| 1073|Caenorhabditis elegans Immunoglobulin-... 28 5.5
U41021-4|AAA82334.1| 348|Caenorhabditis elegans Uncoordinated p... 28 5.5
AF035583-1|AAD09435.1| 348|Caenorhabditis elegans UNC-97 protein. 28 5.5
Z80221-2|CAB02310.1| 405|Caenorhabditis elegans Hypothetical pr... 28 7.3
X54355-1|CAA38240.1| 382|Caenorhabditis elegans lin-11 protein ... 28 7.3
U41536-3|AAN39668.1| 1576|Caenorhabditis elegans Kinesin-like pr... 28 7.3
L14324-6|AAA28182.1| 3343|Caenorhabditis elegans Cadherin family... 28 7.3
AF043693-1|AAB97536.1| 131|Caenorhabditis elegans Hypothetical ... 28 7.3
AC024844-5|AAK29953.1| 156|Caenorhabditis elegans Hypothetical ... 28 7.3
AC006629-1|AAK18925.1| 330|Caenorhabditis elegans Hypothetical ... 28 7.3
AC024821-4|AAF60787.1| 300|Caenorhabditis elegans Hypothetical ... 27 9.7
>U00045-3|AAL02502.1| 868|Caenorhabditis elegans Temporarily
assigned gene nameprotein 204, isoform b protein.
Length = 868
Score = 91.5 bits (217), Expect = 5e-19
Identities = 37/62 (59%), Positives = 50/62 (80%)
Frame = +3
Query: 510 REEKLLSVSGKRKCSHCGEELGRGAAMIIESLSLCYHVWCFRCGVCGAALGDGRAGTDVR 689
+++ +++VSGK +C+HC EELGRGAAMI+ESL+L YH+ CF+C VC +LG G G DVR
Sbjct: 787 KDDSVVAVSGKHRCAHCNEELGRGAAMIVESLNLFYHLACFKCYVCKTSLGSGATGADVR 846
Query: 690 VR 695
VR
Sbjct: 847 VR 848
>U00045-2|AAL02501.1| 1004|Caenorhabditis elegans Temporarily assigned
gene nameprotein 204, isoform a protein.
Length = 1004
Score = 91.5 bits (217), Expect = 5e-19
Identities = 37/62 (59%), Positives = 50/62 (80%)
Frame = +3
Query: 510 REEKLLSVSGKRKCSHCGEELGRGAAMIIESLSLCYHVWCFRCGVCGAALGDGRAGTDVR 689
+++ +++VSGK +C+HC EELGRGAAMI+ESL+L YH+ CF+C VC +LG G G DVR
Sbjct: 923 KDDSVVAVSGKHRCAHCNEELGRGAAMIVESLNLFYHLACFKCYVCKTSLGSGATGADVR 982
Query: 690 VR 695
VR
Sbjct: 983 VR 984
>U00045-1|AAM29684.1| 1099|Caenorhabditis elegans Temporarily assigned
gene nameprotein 204, isoform c protein.
Length = 1099
Score = 91.5 bits (217), Expect = 5e-19
Identities = 37/62 (59%), Positives = 50/62 (80%)
Frame = +3
Query: 510 REEKLLSVSGKRKCSHCGEELGRGAAMIIESLSLCYHVWCFRCGVCGAALGDGRAGTDVR 689
+++ +++VSGK +C+HC EELGRGAAMI+ESL+L YH+ CF+C VC +LG G G DVR
Sbjct: 1018 KDDSVVAVSGKHRCAHCNEELGRGAAMIVESLNLFYHLACFKCYVCKTSLGSGATGADVR 1077
Query: 690 VR 695
VR
Sbjct: 1078 VR 1079
>Z49887-3|CAC70079.1| 639|Caenorhabditis elegans Hypothetical
protein F09B9.2b protein.
Length = 639
Score = 35.9 bits (79), Expect = 0.028
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +3
Query: 549 CSHCGEELGRGAAMIIESLSLCYHVWCFRCGVCGAAL 659
C+ C + L G ++ +L L +HV+CF+C C A L
Sbjct: 131 CAACDQALHSGQVLL--ALGLSWHVYCFKCSECSAVL 165
Score = 29.9 bits (64), Expect = 1.8
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +3
Query: 546 KCSHCGEELGRGAAMIIESLSLCYHVWCFRCGVCGAALGDG 668
KC C + + A ++++ +H C RC CG+ GDG
Sbjct: 189 KCYECEKFI---AGKVLQAGGYKFHPTCARCSRCGSHFGDG 226
Score = 27.9 bits (59), Expect = 7.3
Identities = 11/41 (26%), Positives = 23/41 (56%)
Frame = +3
Query: 543 RKCSHCGEELGRGAAMIIESLSLCYHVWCFRCGVCGAALGD 665
+KC C ++ + ++++ +H+ CF+C CG LG+
Sbjct: 17 KKCDVCRKKC---SGDVLKANDKYFHINCFQCKKCGRNLGE 54
>Z49887-2|CAA90057.1| 625|Caenorhabditis elegans Hypothetical
protein F09B9.2a protein.
Length = 625
Score = 35.9 bits (79), Expect = 0.028
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +3
Query: 549 CSHCGEELGRGAAMIIESLSLCYHVWCFRCGVCGAAL 659
C+ C + L G ++ +L L +HV+CF+C C A L
Sbjct: 117 CAACDQALHSGQVLL--ALGLSWHVYCFKCSECSAVL 151
Score = 29.9 bits (64), Expect = 1.8
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +3
Query: 546 KCSHCGEELGRGAAMIIESLSLCYHVWCFRCGVCGAALGDG 668
KC C + + A ++++ +H C RC CG+ GDG
Sbjct: 175 KCYECEKFI---AGKVLQAGGYKFHPTCARCSRCGSHFGDG 212
Score = 27.9 bits (59), Expect = 7.3
Identities = 11/41 (26%), Positives = 23/41 (56%)
Frame = +3
Query: 543 RKCSHCGEELGRGAAMIIESLSLCYHVWCFRCGVCGAALGD 665
+KC C ++ + ++++ +H+ CF+C CG LG+
Sbjct: 3 KKCDVCRKKC---SGDVLKANDKYFHINCFQCKKCGRNLGE 40
>AF068867-1|AAC35506.1| 639|Caenorhabditis elegans putative
actin-binding proteinUNC-115 protein.
Length = 639
Score = 35.9 bits (79), Expect = 0.028
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +3
Query: 549 CSHCGEELGRGAAMIIESLSLCYHVWCFRCGVCGAAL 659
C+ C + L G ++ +L L +HV+CF+C C A L
Sbjct: 131 CAACDQALHSGQVLL--ALGLSWHVYCFKCSECSAVL 165
Score = 29.9 bits (64), Expect = 1.8
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +3
Query: 546 KCSHCGEELGRGAAMIIESLSLCYHVWCFRCGVCGAALGDG 668
KC C + + A ++++ +H C RC CG+ GDG
Sbjct: 189 KCYECEKFI---AGKVLQAGGYKFHPTCARCSRCGSHFGDG 226
Score = 27.9 bits (59), Expect = 7.3
Identities = 11/41 (26%), Positives = 23/41 (56%)
Frame = +3
Query: 543 RKCSHCGEELGRGAAMIIESLSLCYHVWCFRCGVCGAALGD 665
+KC C ++ + ++++ +H+ CF+C CG LG+
Sbjct: 17 KKCDVCRKKC---SGDVLKANDKYFHINCFQCKKCGRNLGE 54
>AF078157-9|AAG24075.3| 425|Caenorhabditis elegans Hypothetical
protein F25E5.4 protein.
Length = 425
Score = 33.5 bits (73), Expect = 0.15
Identities = 25/76 (32%), Positives = 35/76 (46%), Gaps = 6/76 (7%)
Frame = +2
Query: 353 TGSGTPQDRRTKESTADCPASLVP------PGRAQHAPQHGATEQQPSVSGAGSETDAAR 514
TG TP +EST P+ L+P P ++ G TEQ+ G S TD +
Sbjct: 288 TGICTPSPPSPEESTTLSPSELIPGESTDTPPSSKTDVPEGTTEQEFFTEGPAS-TDHSI 346
Query: 515 GEASQRQREEEMFSLR 562
QR+R + FSL+
Sbjct: 347 STTDQRERLKTSFSLK 362
>U02289-1|AAA18934.1| 1439|Caenorhabditis elegans GTPase-activating
protein protein.
Length = 1439
Score = 31.9 bits (69), Expect = 0.45
Identities = 14/32 (43%), Positives = 24/32 (75%)
Frame = +2
Query: 470 QPSVSGAGSETDAARGEASQRQREEEMFSLRR 565
+P + +G + D A+ EA++R+R+EEM+S RR
Sbjct: 1152 EPILGSSGYDDDEAK-EAARRKRQEEMYSARR 1182
>L16687-1|AAK71357.2| 1317|Caenorhabditis elegans Hypothetical protein
C04D8.1 protein.
Length = 1317
Score = 31.9 bits (69), Expect = 0.45
Identities = 14/32 (43%), Positives = 24/32 (75%)
Frame = +2
Query: 470 QPSVSGAGSETDAARGEASQRQREEEMFSLRR 565
+P + +G + D A+ EA++R+R+EEM+S RR
Sbjct: 1030 EPILGSSGYDDDEAK-EAARRKRQEEMYSARR 1060
>Z99279-1|CAB16496.4| 598|Caenorhabditis elegans Hypothetical
protein Y57G11A.1a protein.
Length = 598
Score = 31.1 bits (67), Expect = 0.79
Identities = 17/38 (44%), Positives = 20/38 (52%)
Frame = +3
Query: 546 KCSHCGEELGRGAAMIIESLSLCYHVWCFRCGVCGAAL 659
KCS C + + R A + L YHV CFRC C AL
Sbjct: 507 KCSLCTKNVYR--AEQFQCFGLLYHVNCFRCIDCKQAL 542
>Z81082-3|CAB03095.2| 603|Caenorhabditis elegans Hypothetical
protein F42G4.3a protein.
Length = 603
Score = 30.7 bits (66), Expect = 1.0
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +3
Query: 549 CSHCGEELGRGAAMIIESLSLCYHVWCFRCGVCGAAL 659
C CG+E+ G +++ +HV CF+CG C L
Sbjct: 411 CVGCGKEI-TGDQPGCNAMNQIFHVDCFKCGQCSKTL 446
>Z81055-4|CAB02893.1| 824|Caenorhabditis elegans Hypothetical
protein F01G10.5 protein.
Length = 824
Score = 30.7 bits (66), Expect = 1.0
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Frame = +3
Query: 369 RRIEEQRSRLRTAQRHSYHQDVPN--TLHNTAPLSNSHQFLAQEVK--RTPREEKLLSVS 536
+++EE R+ LR QRH HQ+ N + +S ++ L +VK + E +L S
Sbjct: 290 QQLEESRAALRDEQRHLEHQEAENGKIVEQLKTVSELNEKLTMQVKDLQDASENELASFR 349
Query: 537 GKRK 548
K K
Sbjct: 350 QKEK 353
>Z47811-3|CAA87787.2| 723|Caenorhabditis elegans Hypothetical
protein K02C4.4 protein.
Length = 723
Score = 30.3 bits (65), Expect = 1.4
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = +3
Query: 531 VSGKRKCSHCGEELGRGAAMIIESLSLCYHVWCFRCGVCGAAL 659
++ K+ C+ CG+++ + S +H CF+C +CG L
Sbjct: 1 MNSKQHCNRCGKQVYPTDKVGPLKDSTFFHQGCFKCYICGTRL 43
>U41624-2|AAF99943.2| 351|Caenorhabditis elegans C.elegans homeobox
protein 14 protein.
Length = 351
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +3
Query: 546 KCSHCGEELGRGAAMIIESLSLCYHVWCFRCGVCGAALGDG 668
KCS C E + ++ ++ + YHV CF+C +C +L G
Sbjct: 106 KCSSCNEGIVPDH-VVRKASNHVYHVECFQCFICKRSLETG 145
>AF489839-1|AAN09795.1| 723|Caenorhabditis elegans lim and
transglutaminase domainprotein protein.
Length = 723
Score = 30.3 bits (65), Expect = 1.4
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = +3
Query: 531 VSGKRKCSHCGEELGRGAAMIIESLSLCYHVWCFRCGVCGAAL 659
++ K+ C+ CG+++ + S +H CF+C +CG L
Sbjct: 1 MNSKQHCNRCGKQVYPTDKVGPLKDSTFFHQGCFKCYICGTRL 43
>AF244368-1|AAF77181.1| 351|Caenorhabditis elegans LIM homeobox
protein CEH-14 protein.
Length = 351
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +3
Query: 546 KCSHCGEELGRGAAMIIESLSLCYHVWCFRCGVCGAALGDG 668
KCS C E + ++ ++ + YHV CF+C +C +L G
Sbjct: 106 KCSSCNEGIVPDH-VVRKASNHVYHVECFQCFICKRSLETG 145
>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
protein Y48G9A.4 protein.
Length = 1115
Score = 30.3 bits (65), Expect = 1.4
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +2
Query: 314 HQETVQLQPALAHTGSGTPQDRRTKESTADCPASLVPP 427
H + +L L HTG TP R+ +S + P PP
Sbjct: 1062 HGDFEKLMNGLKHTGGTTPNRRKMSKSPSPAPRGSAPP 1099
>Z81481-5|CAB63436.1| 405|Caenorhabditis elegans Hypothetical
protein C38D9.7 protein.
Length = 405
Score = 29.9 bits (64), Expect = 1.8
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = +1
Query: 286 CPTVNGCKLAPGNRTTTTSTGSYRK 360
CP NGC + NRT G YRK
Sbjct: 179 CPVPNGCTIIYENRTIRIKGGDYRK 203
>U52003-7|AAM97989.1| 555|Caenorhabditis elegans Hypothetical
protein ZK381.5a protein.
Length = 555
Score = 29.9 bits (64), Expect = 1.8
Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Frame = +3
Query: 546 KCSHCGEELGRGAAMIIESLS-LCYHVWCFRCGVCGAALGD 665
KC C + L G ++ + + YH CFRC C L D
Sbjct: 148 KCEKCPKRLEEGEISVMAARTGKRYHPSCFRCQTCDVLLVD 188
>AF003136-3|AAO38651.1| 352|Caenorhabditis elegans Hypothetical
protein F28B3.5b protein.
Length = 352
Score = 29.9 bits (64), Expect = 1.8
Identities = 18/65 (27%), Positives = 31/65 (47%)
Frame = +3
Query: 294 CEWMQARTRKPYNYNQHWLIQEAEHRRIEEQRSRLRTAQRHSYHQDVPNTLHNTAPLSNS 473
C W K N Q Q IE+++ + + Q ++H++V N++H T + +
Sbjct: 188 CLWWGGHFGKITNNRQEDKEQGDREVLIEKEQEKEKEHQL-TFHENVQNSIHLTKQILSQ 246
Query: 474 HQFLA 488
QFLA
Sbjct: 247 RQFLA 251
>AF003136-2|AAK93851.1| 468|Caenorhabditis elegans Hypothetical
protein F28B3.5a protein.
Length = 468
Score = 29.9 bits (64), Expect = 1.8
Identities = 18/65 (27%), Positives = 31/65 (47%)
Frame = +3
Query: 294 CEWMQARTRKPYNYNQHWLIQEAEHRRIEEQRSRLRTAQRHSYHQDVPNTLHNTAPLSNS 473
C W K N Q Q IE+++ + + Q ++H++V N++H T + +
Sbjct: 188 CLWWGGHFGKITNNRQEDKEQGDREVLIEKEQEKEKEHQL-TFHENVQNSIHLTKQILSQ 246
Query: 474 HQFLA 488
QFLA
Sbjct: 247 RQFLA 251
>Z81482-5|CAB03956.3| 409|Caenorhabditis elegans Hypothetical
protein C40H5.5 protein.
Length = 409
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +3
Query: 549 CSHCGEELGRGAAMIIESLSLCYHVWCFRCGVCGAALGDG 668
C C L R M++++ + +H CF C +CG L G
Sbjct: 171 CRKCEIPLNR-EDMVMKAKEMIFHHACFVCFICGIKLNPG 209
>U72211-1|AAB97099.1| 409|Caenorhabditis elegans putative
transcription factor TTX-3 protein.
Length = 409
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +3
Query: 549 CSHCGEELGRGAAMIIESLSLCYHVWCFRCGVCGAALGDG 668
C C L R M++++ + +H CF C +CG L G
Sbjct: 171 CRKCEIPLNR-EDMVMKAKEMIFHHACFVCFICGIKLNPG 209
>U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna
binding protein familyprotein 1, isoform a protein.
Length = 584
Score = 29.1 bits (62), Expect = 3.2
Identities = 13/58 (22%), Positives = 32/58 (55%)
Frame = +3
Query: 366 HRRIEEQRSRLRTAQRHSYHQDVPNTLHNTAPLSNSHQFLAQEVKRTPREEKLLSVSG 539
H++ ++Q S+ + Q+H Q + N L ++ +QF A + + ++++L++ G
Sbjct: 348 HQQHQQQLSQQQQQQQHPQQQGLGNPLLGNPAMAAQNQFDAITMAQIAHQQQMLALQG 405
>U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type
ribonucleoprotein protein.
Length = 584
Score = 29.1 bits (62), Expect = 3.2
Identities = 13/58 (22%), Positives = 32/58 (55%)
Frame = +3
Query: 366 HRRIEEQRSRLRTAQRHSYHQDVPNTLHNTAPLSNSHQFLAQEVKRTPREEKLLSVSG 539
H++ ++Q S+ + Q+H Q + N L ++ +QF A + + ++++L++ G
Sbjct: 348 HQQHQQQLSQQQQQQQHPQQQGLGNPLLGNPAMAAQNQFDAITMAQIAHQQQMLALQG 405
>EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA
binding protein variantA protein.
Length = 584
Score = 29.1 bits (62), Expect = 3.2
Identities = 13/58 (22%), Positives = 32/58 (55%)
Frame = +3
Query: 366 HRRIEEQRSRLRTAQRHSYHQDVPNTLHNTAPLSNSHQFLAQEVKRTPREEKLLSVSG 539
H++ ++Q S+ + Q+H Q + N L ++ +QF A + + ++++L++ G
Sbjct: 348 HQQHQQQLSQQQQQQQHPQQQGLGNPLLGNPAMAAQNQFDAITMAQIAHQQQMLALQG 405
>AL023493-2|CAD44137.1| 909|Caenorhabditis elegans Hypothetical
protein H20J18.1b protein.
Length = 909
Score = 28.7 bits (61), Expect = 4.2
Identities = 19/87 (21%), Positives = 33/87 (37%)
Frame = +2
Query: 269 SHAQAHVQL*MDASSHQETVQLQPALAHTGSGTPQDRRTKESTADCPASLVPPGRAQHAP 448
+HAQ H+Q A Q+ QLQ + ++ ++ Q A
Sbjct: 143 AHAQQHLQAAQQAQQAQQAQQLQASQQQALQQLQAQQQAQQQAQQQAQQQAQQQAQQQAQ 202
Query: 449 QHGATEQQPSVSGAGSETDAARGEASQ 529
Q G Q V+ + ++ A+ + SQ
Sbjct: 203 QQGGQPQASQVAVSSAQQPQAQPQNSQ 229
>AL023493-1|CAA18898.1| 947|Caenorhabditis elegans Hypothetical
protein H20J18.1a protein.
Length = 947
Score = 28.7 bits (61), Expect = 4.2
Identities = 19/87 (21%), Positives = 33/87 (37%)
Frame = +2
Query: 269 SHAQAHVQL*MDASSHQETVQLQPALAHTGSGTPQDRRTKESTADCPASLVPPGRAQHAP 448
+HAQ H+Q A Q+ QLQ + ++ ++ Q A
Sbjct: 143 AHAQQHLQAAQQAQQAQQAQQLQASQQQALQQLQAQQQAQQQAQQQAQQQAQQQAQQQAQ 202
Query: 449 QHGATEQQPSVSGAGSETDAARGEASQ 529
Q G Q V+ + ++ A+ + SQ
Sbjct: 203 QQGGQPQASQVAVSSAQQPQAQPQNSQ 229
>AF039720-7|AAB96695.1| 131|Caenorhabditis elegans Hypothetical
protein F33D11.1 protein.
Length = 131
Score = 28.7 bits (61), Expect = 4.2
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +3
Query: 549 CSHCGEELGRGAAMIIESLSLCYHVWCFRCGVC 647
C CGE + + E+L+ +H CF+C VC
Sbjct: 65 CKGCGEFIKTN---LCEALNSTWHPTCFQCSVC 94
>Z79694-1|CAB01959.1| 303|Caenorhabditis elegans Hypothetical
protein C15A11.1 protein.
Length = 303
Score = 28.3 bits (60), Expect = 5.5
Identities = 17/53 (32%), Positives = 22/53 (41%)
Frame = +2
Query: 353 TGSGTPQDRRTKESTADCPASLVPPGRAQHAPQHGATEQQPSVSGAGSETDAA 511
TG GT ++ + CPA PPG AP +P +G E AA
Sbjct: 50 TGGGTERECNCAAQSTGCPAG--PPG----APGEDGAPGEPGTAGTDGENGAA 96
>Z78540-4|CAB01734.2| 624|Caenorhabditis elegans Hypothetical
protein C33G3.6 protein.
Length = 624
Score = 28.3 bits (60), Expect = 5.5
Identities = 15/55 (27%), Positives = 25/55 (45%)
Frame = +3
Query: 315 TRKPYNYNQHWLIQEAEHRRIEEQRSRLRTAQRHSYHQDVPNTLHNTAPLSNSHQ 479
+R YN QH H++ +Q S + + + + Y Q + N P +N HQ
Sbjct: 381 SRPNYNQPQH----HQHHQQSHDQNSTISSVEYNQYQQKAGSYGRNYHPYNNHHQ 431
>U42847-4|AAF23186.1| 1073|Caenorhabditis elegans Immunoglobulin-like
cell adhesionmolecule family protein 1 protein.
Length = 1073
Score = 28.3 bits (60), Expect = 5.5
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +1
Query: 274 RPSSCPTVNGCKLAPGNRTTTTSTGSYRKRN 366
R C T NG K +P ++T ++ +GS K N
Sbjct: 911 RARFCTTANGLKCSPVSKTISSGSGSVWKTN 941
>U41021-4|AAA82334.1| 348|Caenorhabditis elegans Uncoordinated
protein 97 protein.
Length = 348
Score = 28.3 bits (60), Expect = 5.5
Identities = 11/39 (28%), Positives = 19/39 (48%)
Frame = +3
Query: 549 CSHCGEELGRGAAMIIESLSLCYHVWCFRCGVCGAALGD 665
C C E + +I++++ +H CF C +C L D
Sbjct: 82 CGKCNEFI---VGRVIKAMNASWHPGCFCCEICNKQLAD 117
>AF035583-1|AAD09435.1| 348|Caenorhabditis elegans UNC-97 protein.
Length = 348
Score = 28.3 bits (60), Expect = 5.5
Identities = 11/39 (28%), Positives = 19/39 (48%)
Frame = +3
Query: 549 CSHCGEELGRGAAMIIESLSLCYHVWCFRCGVCGAALGD 665
C C E + +I++++ +H CF C +C L D
Sbjct: 82 CGKCNEFI---VGRVIKAMNASWHPGCFCCEICNKQLAD 117
>Z80221-2|CAB02310.1| 405|Caenorhabditis elegans Hypothetical
protein ZC247.3 protein.
Length = 405
Score = 27.9 bits (59), Expect = 7.3
Identities = 11/42 (26%), Positives = 22/42 (52%)
Frame = +3
Query: 543 RKCSHCGEELGRGAAMIIESLSLCYHVWCFRCGVCGAALGDG 668
++C+ C +L + ++ + +H+ CF+C VC L G
Sbjct: 125 QRCAGCDGKLEK-EDLVRRARDKVFHIRCFQCSVCQRLLDTG 165
>X54355-1|CAA38240.1| 382|Caenorhabditis elegans lin-11 protein
protein.
Length = 382
Score = 27.9 bits (59), Expect = 7.3
Identities = 11/42 (26%), Positives = 22/42 (52%)
Frame = +3
Query: 543 RKCSHCGEELGRGAAMIIESLSLCYHVWCFRCGVCGAALGDG 668
++C+ C +L + ++ + +H+ CF+C VC L G
Sbjct: 102 QRCAGCDGKLEK-EDLVRRARDKVFHIRCFQCSVCQRLLDTG 142
>U41536-3|AAN39668.1| 1576|Caenorhabditis elegans Kinesin-like protein
protein 4,isoform c protein.
Length = 1576
Score = 27.9 bits (59), Expect = 7.3
Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 9/82 (10%)
Frame = +3
Query: 243 HTLQALSAAPTPKLMSNCEWMQARTRKPYNYNQHWLIQEAEHRRIEEQRSRLRT------ 404
H+L+ A P +SN + PYN +++E+ RIE +R T
Sbjct: 1455 HSLRMNRAVSLPNAISNAGQVMTSIISPYNDKLTGIMEESNSLRIETVPTRSSTVPETMC 1514
Query: 405 ---AQRHSYHQDVPNTLHNTAP 461
A++ S +DV N N++P
Sbjct: 1515 FSAAKKLSPTEDVKNGNENSSP 1536
>L14324-6|AAA28182.1| 3343|Caenorhabditis elegans Cadherin family
protein 3 protein.
Length = 3343
Score = 27.9 bits (59), Expect = 7.3
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = +2
Query: 371 QDRRTKESTADCPASLVPPGRAQHAPQHGATEQQPSVSGAGSETDA 508
+D T T +CPA++ + P+ G+ ++SG +ET A
Sbjct: 711 KDLGTPSKTTNCPATIFIEDVNDNVPKFGSRYYTATISGKSNETVA 756
>AF043693-1|AAB97536.1| 131|Caenorhabditis elegans Hypothetical
protein C34B2.4 protein.
Length = 131
Score = 27.9 bits (59), Expect = 7.3
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +3
Query: 549 CSHCGEELGRGAAMIIESLSLCYHVWCFRCGVC 647
C CGE + E+L+ +H CF+C VC
Sbjct: 65 CKGCGEFIKTN---FCEALNSTWHPTCFQCSVC 94
>AC024844-5|AAK29953.1| 156|Caenorhabditis elegans Hypothetical
protein Y65B4A.7 protein.
Length = 156
Score = 27.9 bits (59), Expect = 7.3
Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 3/41 (7%)
Frame = +3
Query: 549 CSHCGEELGRGAAM---IIESLSLCYHVWCFRCGVCGAALG 662
C C L R A +I+ YH+ C +C VC +G
Sbjct: 21 CKGCTTTLTRQEAQTGKVIKIQDEMYHISCLKCSVCQTVIG 61
>AC006629-1|AAK18925.1| 330|Caenorhabditis elegans Hypothetical
protein F12E12.5 protein.
Length = 330
Score = 27.9 bits (59), Expect = 7.3
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Frame = +3
Query: 450 NTAPLSNSHQFLAQEVK-RTPREEKLLSV--SGKRKCSHCGEELGRGAAMIIESLSLCYH 620
N+A L N+ Q L+ + PR L++ + +C HC + A M I +L
Sbjct: 237 NSATLPNTDQQLSPTLSPNEPRFRNLITSEPTPSFECKHCTIKF-HDATMSIMHNALHAP 295
Query: 621 VWCFRCGVCGAALGD 665
F+C +CGA G+
Sbjct: 296 GSPFKCAICGAECGN 310
>AC024821-4|AAF60787.1| 300|Caenorhabditis elegans Hypothetical
protein Y55B1AR.3 protein.
Length = 300
Score = 27.5 bits (58), Expect = 9.7
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +3
Query: 333 YNQHWLIQEAEHRRIEEQRSRLRTAQRHSYHQDVPNTL 446
Y+++ I + + RI+ S QR S+H D+PN L
Sbjct: 210 YSRNVSIDKQDVTRIKNTISTFPKLQRGSFHVDIPNPL 247
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,002,356
Number of Sequences: 27780
Number of extensions: 326981
Number of successful extensions: 1493
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 1342
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1489
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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