Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30657
         (697 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325133-1|ABD14147.1|  181|Apis mellifera complementary sex det...    27   0.23 
DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex det...    23   2.1  
DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex det...    23   2.1  
DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex det...    23   2.1  
DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex det...    23   2.1  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       23   2.8  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    23   2.8  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    23   2.8  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   3.7  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   3.7  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             23   3.7  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   6.4  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          21   8.5  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    21   8.5  

>DQ325133-1|ABD14147.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 26.6 bits (56), Expect = 0.23
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +3

Query: 363 EHRRIEEQRSRLRTAQRHSYHQDVPNTLHNTAPLSNSHQF 482
           ++R   ++RSR RT +  S     P  + N  PLSN++ +
Sbjct: 58  KYRETSKERSRNRTERERSKE---PKIISNNNPLSNNYNY 94


>DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 15/65 (23%), Positives = 29/65 (44%)
 Frame = +3

Query: 288 SNCEWMQARTRKPYNYNQHWLIQEAEHRRIEEQRSRLRTAQRHSYHQDVPNTLHNTAPLS 467
           S   + ++R R+  +Y      +  E+R    +RSR R  +  S    + ++L N    S
Sbjct: 35  SRKRYSRSREREQKSYKNER--EYREYRETSRERSRDRKERERSKEPKIISSLSNNYKYS 92

Query: 468 NSHQF 482
           N + +
Sbjct: 93  NYNNY 97


>DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 15/65 (23%), Positives = 29/65 (44%)
 Frame = +3

Query: 288 SNCEWMQARTRKPYNYNQHWLIQEAEHRRIEEQRSRLRTAQRHSYHQDVPNTLHNTAPLS 467
           S   + ++R R+  +Y      +  E+R    +RSR R  +  S    + ++L N    S
Sbjct: 35  SRKRYSRSREREQKSYKNER--EYREYRETSRERSRDRKERERSKEPKIISSLSNNYKYS 92

Query: 468 NSHQF 482
           N + +
Sbjct: 93  NYNNY 97


>DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 15/65 (23%), Positives = 29/65 (44%)
 Frame = +3

Query: 288 SNCEWMQARTRKPYNYNQHWLIQEAEHRRIEEQRSRLRTAQRHSYHQDVPNTLHNTAPLS 467
           S   + ++R R+  +Y      +  E+R    +RSR R  +  S    + ++L N    S
Sbjct: 35  SRKRYSRSREREQKSYKNER--EYREYRETSRERSRDRKERERSKEPKIISSLSNNYKYS 92

Query: 468 NSHQF 482
           N + +
Sbjct: 93  NYNNY 97


>DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 15/65 (23%), Positives = 29/65 (44%)
 Frame = +3

Query: 288 SNCEWMQARTRKPYNYNQHWLIQEAEHRRIEEQRSRLRTAQRHSYHQDVPNTLHNTAPLS 467
           S   + ++R R+  +Y      +  E+R    +RSR R  +  S    + ++L N    S
Sbjct: 35  SRKRYSRSREREQKSYKNER--EYREYRETSRERSRDRKERERSKEPKIISSLSNNYKYS 92

Query: 468 NSHQF 482
           N + +
Sbjct: 93  NYNNY 97


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +2

Query: 500 TDAARGEASQRQREEEMFSLRRGTRS 577
           T +  G+  QRQREE +   + G  S
Sbjct: 478 TTSIHGDRLQRQREEALADFKSGRMS 503


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +3

Query: 555 HCGEELGRGAAMII 596
           HC EE+GRG   I+
Sbjct: 595 HCAEEIGRGQYGIV 608


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +3

Query: 555 HCGEELGRGAAMII 596
           HC EE+GRG   I+
Sbjct: 633 HCAEEIGRGQYGIV 646


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 11/36 (30%), Positives = 16/36 (44%)
 Frame = +1

Query: 268 LPRPSSCPTVNGCKLAPGNRTTTTSTGSYRKRNTAG 375
           LPRP SC T     +   N+T  +   +  K +  G
Sbjct: 654 LPRPISCHTTPDSFIEAPNKTLPSLPSTLTKNSKQG 689


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 10/30 (33%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
 Frame = +3

Query: 483 LAQEVKR---TPREEKLLSVSGKRKCSHCG 563
           LA ++K    +P+EE+   ++G+R    CG
Sbjct: 210 LADQIKNGIVSPQEERPKGINGRRASLFCG 239


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 10/30 (33%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
 Frame = +3

Query: 483 LAQEVKR---TPREEKLLSVSGKRKCSHCG 563
           LA ++K    +P+EE+   ++G+R    CG
Sbjct: 205 LADQIKNGIVSPQEERPKGINGRRASLFCG 234


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 18/75 (24%), Positives = 26/75 (34%), Gaps = 4/75 (5%)
 Frame = +2

Query: 323 TVQLQPALAHTG----SGTPQDRRTKESTADCPASLVPPGRAQHAPQHGATEQQPSVSGA 490
           T Q QP +        SG P  + +   +   P    PP  +Q  P  G     PS + +
Sbjct: 2   TQQKQPIITQQSQQPSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNPS 61

Query: 491 GSETDAARGEASQRQ 535
                 A G    +Q
Sbjct: 62  QMMISPASGIHQMQQ 76


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = +2

Query: 47  PTASSAAETEKPRIHRKRDHYEKQSSAVR 133
           PT   A  TEK  + R      K +SAVR
Sbjct: 141 PTPLGAVATEKMFVARHLAETPKNTSAVR 169


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 16  KRDGRLPL*GSHSQFCRRN 72
           K D +LPL    S+FC +N
Sbjct: 137 KMDHQLPLKQRSSEFCGKN 155


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,504
Number of Sequences: 438
Number of extensions: 4211
Number of successful extensions: 23
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21317625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)