Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30656
         (795 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9G1.04 |oxa101|oxa1, oxa1-1, oxa1sp1|mitochondrial inner mem...    31   0.25 
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    29   1.0  
SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyce...    28   1.8  
SPCC4B3.01 ||SPCP25A2.01c|thiosulfate sulfurtransferase|Schizosa...    27   2.3  
SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual        27   4.1  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    27   4.1  
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce...    26   5.4  
SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces ...    25   9.4  
SPCC16C4.08c |skb15||Shk1 kinase binding protein 15|Schizosaccha...    25   9.4  

>SPAC9G1.04 |oxa101|oxa1, oxa1-1, oxa1sp1|mitochondrial inner
           membrane translocase Oxa101|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 374

 Score = 30.7 bits (66), Expect = 0.25
 Identities = 13/43 (30%), Positives = 25/43 (58%)
 Frame = +3

Query: 648 LGFQFIPSMRGILKGISICMAGFSEAYYCHGNVISSVWTGGQY 776
           LGFQF PS   +L  +S   +GF+ +++ +  + ++ +T   Y
Sbjct: 39  LGFQFRPSSTNVLAEVSTATSGFNPSWWPYALIQNTAYTINVY 81


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 3/82 (3%)
 Frame = -3

Query: 523 CKQVPSDAKSWPHDSISFTKWLFRNRSASRPVPT---CRLSLRLYNTHESTTETKLRYPF 353
           C  +PS + S   ++ S  +W F   S + P      C L  +   T    +ET+   PF
Sbjct: 384 CSSLPSPSISKKDENGSVKEW-FGYYSCNNPCTLFFDCGLH-KCSKTCHPISETRAHCPF 441

Query: 352 PGDFVSKSYCGATFRTWSTRGH 287
             D ++K  CG    ++  +GH
Sbjct: 442 ATDVLTKCPCGKEDISFLLKGH 463


>SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 844

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +2

Query: 557 GGTVSHRTSYTRRTVLSSRHNKSVLLLRKMSWVS 658
           G  + HR  Y    +L SR+N+S +  +  +W+S
Sbjct: 784 GRAIRHRDDYASIILLDSRYNRSSIQRKLPNWLS 817


>SPCC4B3.01 ||SPCP25A2.01c|thiosulfate
           sulfurtransferase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 298

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 4/38 (10%)
 Frame = +3

Query: 147 IPPTFAMYEALKDSCQN----NATFFKPDDTENGQRLY 248
           I P   + + LKD+ Q     +AT++ P DT+NG++ Y
Sbjct: 11  ILPIKGVLQKLKDNAQKTVLLDATWYLPTDTKNGKKEY 48


>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1279

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -3

Query: 355  FPGDFVSKSYCGATFRTWSTRGHTVSI 275
            FP   V+  Y G++   W+ RGH  ++
Sbjct: 1164 FPWKLVTHDYTGSSSSEWAVRGHKENV 1190


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -3

Query: 358  PFPGDFVSKSYCGATFRTWSTRGHTVSIWS 269
            PFP +F     C A +R  +  GH VS+W+
Sbjct: 1798 PFPIEFK----CDAPYRIHNYTGHAVSVWA 1823


>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 813

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +3

Query: 162 AMYEALKDSCQNNATFFKPDDTENGQRLYQG 254
           A+ EAL +  + + +F    D ENGQ L QG
Sbjct: 459 ALLEALANMNREDPSFRYTQDLENGQLLIQG 489


>SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 805

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +2

Query: 560 GTVSHRTSYTRRTVLSSRHNKSVLLLRKMS 649
           G VSH  SY R   LS  HN+   +L  M+
Sbjct: 703 GCVSHTASYLRLWALSLAHNQLSSVLWNMT 732


>SPCC16C4.08c |skb15||Shk1 kinase binding protein
           15|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 341

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 9/35 (25%), Positives = 20/35 (57%)
 Frame = +2

Query: 584 YTRRTVLSSRHNKSVLLLRKMSWVSIHTIDARNTK 688
           +T+  +L+   N  + +  K SW+ +HT+ + + K
Sbjct: 87  FTKNHLLACHDNGQISMWSKGSWLLVHTLKSSSHK 121


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,647,103
Number of Sequences: 5004
Number of extensions: 82245
Number of successful extensions: 230
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 230
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)