Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30656
         (795 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0386 + 18429675-18430679,18431001-18431111,18431139-184311...    30   1.8  
05_05_0059 + 22011168-22011662,22012668-22012894,22013029-220133...    30   1.8  
01_06_0837 - 32328191-32328369,32328682-32328731,32328844-323289...    30   2.4  
02_01_0572 - 4220947-4221167,4221339-4221438,4221525-4221627,422...    29   3.2  
06_01_0317 + 2281564-2283855                                           29   4.3  
05_07_0286 - 28988294-28988383,28988486-28989007,28989117-289897...    29   4.3  
03_06_0023 + 31089351-31089822,31089921-31090795                       28   9.8  

>12_02_0386 +
           18429675-18430679,18431001-18431111,18431139-18431195,
           18431552-18431589,18431688-18431733,18431811-18431849
          Length = 431

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = -2

Query: 152 WNTIVAFCTAV*STCRRIGKFHYFKRTGSKPDSAS 48
           WNT++A C+   S    +  F+  + TG +PD+A+
Sbjct: 71  WNTMIAACSEEGSLADTVKVFNRMRATGFEPDAAT 105


>05_05_0059 +
           22011168-22011662,22012668-22012894,22013029-22013377,
           22013464-22013508,22013589-22013735,22013851-22013988,
           22014126-22014159,22014258-22014430
          Length = 535

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = +3

Query: 645 CLGFQFIPSMRGILKGISICMAGFSEA-YYCHGNVISSVWTG 767
           CL F   PS+  +L  I++ ++ FS+A Y+C+   I+  + G
Sbjct: 434 CLRFAQTPSVAAVLMTIALSLSSFSQAGYFCNVQDIAPKYAG 475


>01_06_0837 -
           32328191-32328369,32328682-32328731,32328844-32328923,
           32329193-32329345,32329505-32329654,32329877-32330000,
           32330086-32330198,32330287-32330420,32330566-32331232
          Length = 549

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 31/127 (24%), Positives = 53/127 (41%), Gaps = 7/127 (5%)
 Frame = +3

Query: 30  MRLKFITRGVRFASSTLKIMEFSDPPASASYCCAESNDGIPPTFAMYEALKDS-----CQ 194
           MRLK+    V   +S+  I++F D   S  +    SND    + + ++ +KDS      Q
Sbjct: 228 MRLKYPHIAVGALASSAPILQFEDVVPSTIFYDLVSNDFKRESLSCFQTIKDSWKALDAQ 287

Query: 195 NNAT--FFKPDDTENGQRLYQGFMTLSDHIETVWPLVDHVRKVAPQYDFDTKSPGNGYRS 368
            N      K   T +  +  +    LSD + + +  +  V    P  DF    PGN  + 
Sbjct: 288 GNGQDGLLKLSKTFHLCKTIKNTGELSDWLSSAYSYLAMVDYPMPA-DFMMPLPGNPIKE 346

Query: 369 FVSVVDS 389
             + +D+
Sbjct: 347 LCTKIDN 353


>02_01_0572 -
           4220947-4221167,4221339-4221438,4221525-4221627,
           4221896-4222036,4222162-4222319,4222752-4222826,
           4222852-4222910,4223085-4223183,4223464-4223596
          Length = 362

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 20/56 (35%), Positives = 25/56 (44%)
 Frame = -3

Query: 520 KQVPSDAKSWPHDSISFTKWLFRNRSASRPVPTCRLSLRLYNTHESTTETKLRYPF 353
           KQ P D K WPH   SF    FR R A  P     L+ R+ NT+      K  + +
Sbjct: 163 KQSPEDLKIWPH---SFE---FRLRVALSPTGDLMLTSRIKNTNADGKPFKFGFSY 212


>06_01_0317 + 2281564-2283855
          Length = 763

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -2

Query: 152 WNTIVAFCTAV*STCRRIGKFHYFKRTGSKPDSAS 48
           WNTI+A      S  R +G F   +R G +PD  S
Sbjct: 69  WNTIMAVQARAGSHGRAVGAFLEMRRQGFRPDHTS 103


>05_07_0286 -
           28988294-28988383,28988486-28989007,28989117-28989758,
           28990554-28990597,28990836-28991016
          Length = 492

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = +2

Query: 557 GGTVSHRTSYTRRTVLSSRHNKSVLLLRKMSWVSIHTIDARNTKRHIHMY 706
           G  +S R    R +VL+ RH +    L   +W   HTI A   + H+  +
Sbjct: 36  GRVLSRRARRRRSSVLAWRHRRCFGGLILQTWKKNHTISAVQQRSHLERF 85


>03_06_0023 + 31089351-31089822,31089921-31090795
          Length = 448

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = +3

Query: 630 CFYGRCLGFQFIPSMRGILKGIS-ICMAGFSEAYYCHGNVISSVWTGG 770
           CF   C G+    +M G+L G+  +C   FS+ + C+ + I +VW  G
Sbjct: 341 CFMSHC-GWN--STMEGVLHGVPFLCWPYFSDQF-CNQSYICNVWKTG 384


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,699,996
Number of Sequences: 37544
Number of extensions: 530192
Number of successful extensions: 1389
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1332
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1389
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2150667972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)