Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30656
         (795 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006619-3|AAK68253.1|  943|Caenorhabditis elegans Hypothetical ...   109   2e-24
U58755-10|AAB00699.1| 2761|Caenorhabditis elegans Hypothetical p...    31   1.3  
AF002197-3|AAD34660.1| 1451|Caenorhabditis elegans Notch signali...    29   5.1  
Z73976-4|CAA98287.2|  965|Caenorhabditis elegans Hypothetical pr...    28   6.7  

>AC006619-3|AAK68253.1|  943|Caenorhabditis elegans Hypothetical
           protein C46C11.1 protein.
          Length = 943

 Score =  109 bits (262), Expect = 2e-24
 Identities = 69/218 (31%), Positives = 117/218 (53%), Gaps = 8/218 (3%)
 Frame = +3

Query: 162 AMYEALKDSCQNNATFFKP--DDTENG--QRLYQGFMTLSDHIETVWPLVDHVRKVAPQY 329
           A+ E +   C +NAT F+       NG  +R+      L   IET+   +  +++VAP+Y
Sbjct: 59  AILELIVQMCSDNATHFEKLAQSGANGYNERMPVVQTALQTAIETLKGNIKKLQEVAPKY 118

Query: 330 DFDTKSPGNGYRSFVSVVDSCVLYSLKLSRQVGTGREALLFRKSHFVKEIESCGQLLASL 509
           D+D K+PGNGYRS + + D+ +L+ + L + V   R  L+FR SHF KE+E+   ++  L
Sbjct: 119 DYDEKTPGNGYRSLICICDTTLLHVVSLQKAVFEQRGYLIFRISHFCKELEAYATVIDYL 178

Query: 510 GTCLH-HLQTLLGWAPPGELFPT---EHHTPEELFSQADTINQYCFYGRCLGFQFIPSMR 677
              +   L+T       G LFP     + T +E+    + ++   F+GR +GFQF PS+ 
Sbjct: 179 NKFIPLCLETERNMR--GSLFPPLDGNYETYQEILRVMEKLDSSVFFGRPIGFQFSPSIN 236

Query: 678 GILKGISICMAGFSEAYYCHGNVISSVWTGGQYLINPE 791
            I + I + +A +S ++      I S+   G++ ++PE
Sbjct: 237 KIFRIIGVVLATYSLSWEKGHGAIGSLINTGRFFLSPE 274


>U58755-10|AAB00699.1| 2761|Caenorhabditis elegans Hypothetical
            protein C34D4.14 protein.
          Length = 2761

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 7/89 (7%)
 Frame = +3

Query: 288  WPLVDHVRKVAPQYDFDTKSPGNGYRSFVSVVDSCVLYSLKLSRQVGTGREAL------- 446
            W   D +    P+  +  +SPG  +  FV V+++      K   Q  TG  +L       
Sbjct: 2649 WSRDDILNYTEPKLGYTRESPG--FLRFVDVMEALTAQERKNFLQFATGCSSLPPGGLAN 2706

Query: 447  LFRKSHFVKEIESCGQLLASLGTCLHHLQ 533
            L  +   V+++ES      S+ TC+H+L+
Sbjct: 2707 LHPRLTIVRKVESGDGSYPSVNTCVHYLK 2735


>AF002197-3|AAD34660.1| 1451|Caenorhabditis elegans Notch signaling
            pathway homologprotein 1 protein.
          Length = 1451

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
 Frame = +3

Query: 168  YEALKDSCQNNATFFKPDDTENGQ-----RLYQGFMTLSDHIETVWPLVDHV 308
            Y++  + CQ+N  + K     NG      R  + +  LS  + +VWP+V+ V
Sbjct: 1366 YDSAANMCQHNYVYGKCRTESNGTYCEVGRRTRTYFVLSGSVLSVWPIVEEV 1417


>Z73976-4|CAA98287.2|  965|Caenorhabditis elegans Hypothetical
           protein T07C12.8 protein.
          Length = 965

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +1

Query: 553 PRGNCFPPNIIHPKNCSLKPTQ*I-SIASTEDVLGFNSYHR 672
           P G+ +PPN+++ K  ++ P + I S   +  V     YH+
Sbjct: 588 PEGSIYPPNLMNKKKININPIKKIPSSTPSTPVENIEEYHK 628


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,304,250
Number of Sequences: 27780
Number of extensions: 464819
Number of successful extensions: 1182
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1181
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1935274832
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)