Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30656
         (795 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    23   2.5  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   2.5  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    22   5.7  
S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    22   7.5  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   10.0 

>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +3

Query: 684 LKGISICMAGFSEAYYCHGNVIS 752
           ++ I++CMAG    Y C G  +S
Sbjct: 188 VQSINLCMAGRLFGYLCPGMALS 210


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +3

Query: 528 LQTLLGWAPPGELFPTE 578
           + T+  W PP  L+PTE
Sbjct: 568 INTVAEWEPPRALWPTE 584


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -2

Query: 635 EAILIYCVGLREQFFGCM 582
           E I   CVGL E+ F C+
Sbjct: 146 EVIYTACVGLLERAFRCL 163


>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
           protein.
          Length = 169

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 10/28 (35%), Positives = 15/28 (53%), Gaps = 3/28 (10%)
 Frame = +1

Query: 565 CFP---PNIIHPKNCSLKPTQ*ISIAST 639
           C P   PN+I+P  C + P+  +  A T
Sbjct: 45  CLPFCGPNVINPFFCDMSPSLSLLCADT 72


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -3

Query: 316 TFRTWSTRGHTVSIWSLNVMN 254
           T + W  RG T S+ + N+M+
Sbjct: 512 TIKEWIERGTTKSMEAANIMS 532


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 245,518
Number of Sequences: 438
Number of extensions: 5966
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25125039
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)