Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30654
(792 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC30D10.07c |||biotin-protein ligase |Schizosaccharomyces pomb... 30 0.44
SPAC1039.06 |||alanine racemase |Schizosaccharomyces pombe|chr 1... 28 1.8
SPBC651.05c |dot2||EAP30 family protein Dot2|Schizosaccharomyces... 28 1.8
SPBC27.08c |sua1|SPBC28F2.01c|sulfate adenylyltransferase |Schiz... 28 1.8
SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces... 27 2.3
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch... 27 3.1
SPAC5D6.04 |||auxin family transmembrane transporter |Schizosacc... 27 3.1
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb... 27 4.1
SPAC12B10.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 4.1
SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomy... 27 4.1
SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyce... 26 5.4
SPAPB1A10.15 |||Arv1-like family protein|Schizosaccharomyces pom... 26 7.1
SPAPB24D3.01 ||SPAPB2C8.02|transcription factor |Schizosaccharom... 25 9.4
SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pomb... 25 9.4
>SPBC30D10.07c |||biotin-protein ligase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 631
Score = 29.9 bits (64), Expect = 0.44
Identities = 31/124 (25%), Positives = 57/124 (45%), Gaps = 1/124 (0%)
Frame = -1
Query: 780 LTQG*VFPQNLQSLLDSQTKGVIYFSL-GTLQEAEKLSVKTLQVFADAFRELPFTVLWKI 604
LT +FP N++ TK I +L ++ ++ ++ T Q F+D E+P L +
Sbjct: 254 LTDQYLFPNNVE------TKRFIEKALTNKVKNQDEDTLYTFQ-FSDISSEIPEHQLANL 306
Query: 603 GKMSTLKLSDNVITDVWFPQQQLLAHKNVRAFITHGGPRSLEEALFYEVPIIGFPLITSR 424
+ L SDN I +W+ ++ + K +F + + F +PII P+I S
Sbjct: 307 DISADLSDSDNEIVKIWYGDEEKICKKAKPSFDLELYAKLINGCRF-GLPIIVAPVIRST 365
Query: 423 KIFI 412
+ +
Sbjct: 366 QTLL 369
>SPAC1039.06 |||alanine racemase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 415
Score = 27.9 bits (59), Expect = 1.8
Identities = 14/25 (56%), Positives = 15/25 (60%)
Frame = -3
Query: 154 HVGHSYLYTCSRSISAIFNFSCAEM 80
H GHSY SRSI A F CAE+
Sbjct: 206 HAGHSY---ASRSIDAASEFLCAEI 227
>SPBC651.05c |dot2||EAP30 family protein Dot2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 252
Score = 27.9 bits (59), Expect = 1.8
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Frame = -1
Query: 408 ELTKYGAGEILDPLHIDKQTLKQVISTVATDEK----YKKAIIKLKGMV-VDPLISGPDN 244
EL + + EI L ++ LK AT+ K ++ +KL + +DP +SG D
Sbjct: 25 ELIEQQSDEIASQLSTFQEALKTFAREHATEIKQNSQFRNTFVKLALKIGLDPFVSGSDE 84
Query: 243 AVW 235
+ W
Sbjct: 85 SAW 87
>SPBC27.08c |sua1|SPBC28F2.01c|sulfate adenylyltransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 490
Score = 27.9 bits (59), Expect = 1.8
Identities = 21/84 (25%), Positives = 40/84 (47%), Gaps = 7/84 (8%)
Frame = -1
Query: 426 RKIFIRELTKYGAGEILDPL-------HIDKQTLKQVISTVATDEKYKKAIIKLKGMVVD 268
R++ +R ++GA ++ P+ ID T +V + ++Y K KL + +
Sbjct: 203 RELTVRAAKQHGARVLIHPVVGMTKPGDIDHFTRVRVYEAIL--QRYPKGSAKLSLLPLA 260
Query: 267 PLISGPDNAVWWTEYVLRNRGAQH 196
++GP A+W + +N GA H
Sbjct: 261 MRMAGPREALWHA-IIRKNYGASH 283
>SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 578
Score = 27.5 bits (58), Expect = 2.3
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +3
Query: 42 FSAQIVLANVCKYISAQEKLNIAEIER 122
++ Q LA C Y+SA++ N+AEI R
Sbjct: 442 YAMQNELAERCNYLSAEQLSNVAEILR 468
>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 867
Score = 27.1 bits (57), Expect = 3.1
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +1
Query: 232 PPDSVVGTRNQRIDNHTFKLNYRFFVLFISGHCGY 336
PP S NQ +D+ TFK Y + L G+ G+
Sbjct: 831 PPSSAFAYSNQEMDSATFKDAYLYTRLCNLGYLGF 865
>SPAC5D6.04 |||auxin family transmembrane transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 452
Score = 27.1 bits (57), Expect = 3.1
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Frame = +2
Query: 278 IPLSLIIAFL---YFSSVATVDMTCFNVCLSMCKGS 376
+PL+L+ AF YFS ++TVD F V + + GS
Sbjct: 366 VPLALLPAFSLLSYFSEISTVDDPVFVVVIFLLVGS 401
>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1919
Score = 26.6 bits (56), Expect = 4.1
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +2
Query: 338 TCFNVCLSMCKGSKISPAPYLVSSLINIFLDVIRGKPMIGTS*N 469
TC C+S PA YL+S + D++R ++ TS N
Sbjct: 1221 TCLKTCISEVMAENKEPAKYLISRI----SDLVRAAFVLSTSDN 1260
>SPAC12B10.02c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 235
Score = 26.6 bits (56), Expect = 4.1
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = -2
Query: 191 VHQLLALPSSNITCWTFLLIYLQSFYFCYI*LFLC*NVFADVCEHD 54
+++L + N TF+L+ L S F + F C NV+A + D
Sbjct: 58 IYRLTNMVEGNTKLRTFVLLILVSAVFLTLIEFPCRNVYAKISTED 103
>SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 756
Score = 26.6 bits (56), Expect = 4.1
Identities = 15/53 (28%), Positives = 28/53 (52%)
Frame = -1
Query: 441 PLITSRKIFIRELTKYGAGEILDPLHIDKQTLKQVISTVATDEKYKKAIIKLK 283
PL+ + +FI+ L +Y E+LD + + T K + + T E + I+L+
Sbjct: 428 PLVGLKNLFIKWLRRYTQVELLD--YQESSTFKDIAIRLNTAEYIYRTTIELE 478
>SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 698
Score = 26.2 bits (55), Expect = 5.4
Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
Frame = +2
Query: 614 KTVKGNSLKASAKT*SVLTDNFSASCRVPKLK*ITPFV*E--SNNDCKFWGKTHPWV 778
K K KA T S++TDN + R+P L + + K W TH WV
Sbjct: 128 KLAKSGETKAIDSTGSLVTDNSTDDSRIPSLAAVKLIRGKFAGRQLRKVWLPTHLWV 184
>SPAPB1A10.15 |||Arv1-like family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 220
Score = 25.8 bits (54), Expect = 7.1
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +2
Query: 347 NVCLSMCKGSKISPAPYLVSSLINIFLDVIRGKPMI 454
N+ L+ CK K Y+ ++ I +DVI KP +
Sbjct: 23 NIRLAQCKNCKQFADKYIELDVVLISMDVILMKPQV 58
>SPAPB24D3.01 ||SPAPB2C8.02|transcription factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 594
Score = 25.4 bits (53), Expect = 9.4
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +3
Query: 24 LLVLDQFSAQIVLANVCKYISAQEKLNIAEI 116
LL++ QF+A + L +CK + Q L I ++
Sbjct: 271 LLIMIQFAAHVSLHTLCKALCGQACLMIRDL 301
>SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 990
Score = 25.4 bits (53), Expect = 9.4
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = -1
Query: 669 VKTLQVFADAFRELPFTVLWKIG 601
V T+Q F D F E P VL +G
Sbjct: 750 VTTIQYFCDRFTEFPAAVLLTLG 772
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,411,960
Number of Sequences: 5004
Number of extensions: 72500
Number of successful extensions: 199
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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