Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30653
(811 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|ch... 87 4e-18
SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces... 58 1e-09
SPAP8A3.08 |cdc4||myosin II light chain|Schizosaccharomyces pomb... 57 3e-09
SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit Prp31|S... 33 0.063
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo... 26 7.3
SPAC3C7.07c |||arginine-tRNA protein transferase |Schizosaccharo... 25 9.6
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos... 25 9.6
>SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 150
Score = 86.6 bits (205), Expect = 4e-18
Identities = 54/144 (37%), Positives = 79/144 (54%), Gaps = 6/144 (4%)
Frame = +3
Query: 33 RYFKEQDIDEFRECFYLFARS--GQITSLDELTVIMRSLGMSPT---IQELAGYLKGKG- 194
R ++ I EFRE F LF R G ITS +EL V+MRSLG SPT +Q++ + G
Sbjct: 4 RNLTDEQIAEFREAFSLFDRDQDGNITS-NELGVVMRSLGQSPTAAELQDMINEVDADGN 62
Query: 195 GKMSFADFLEVMHIHSRAENLPSEVVNAFKAGDPNKTGVISAKQLRTLLQKWGEGLSARE 374
G + F +FL +M + + EV AFK D + G I+ ++L +L GE LS E
Sbjct: 63 GTIDFTEFLTMMARKMKDTDNEEEVREAFKVFDKDGNGYITVEELTHVLTSLGERLSQEE 122
Query: 375 VDNIFREANVSNSATVRYEDFVKI 446
V ++ REA+ + YE+F ++
Sbjct: 123 VADMIREADTDGDGVINYEEFSRV 146
>SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 143
Score = 58.0 bits (134), Expect = 1e-09
Identities = 41/136 (30%), Positives = 66/136 (48%), Gaps = 2/136 (1%)
Frame = +3
Query: 42 KEQDIDEFRECFYLFA--RSGQITSLDELTVIMRSLGMSPTIQELAGYLKGKGGKMSFAD 215
KEQ DE +E F L+ + G I + + ++RSLG++ T ELA G +
Sbjct: 5 KEQT-DEMKEAFVLYDIDKDGLIPT-SHVGSVLRSLGINVTDAELAKLSNELGDAIDEKK 62
Query: 216 FLEVMHIHSRAENLPSEVVNAFKAGDPNKTGVISAKQLRTLLQKWGEGLSAREVDNIFRE 395
F+ + R E + AF+ D + +G I + ++ GE LS EV + +E
Sbjct: 63 FMSFVSNKLRETESEEEYIKAFRVFDKDNSGYIETAKFADYMKTLGEKLSDNEVQLMVQE 122
Query: 396 ANVSNSATVRYEDFVK 443
A+ +NS + Y DFV+
Sbjct: 123 ADPTNSGSFDYYDFVQ 138
>SPAP8A3.08 |cdc4||myosin II light chain|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 141
Score = 57.2 bits (132), Expect = 3e-09
Identities = 42/141 (29%), Positives = 72/141 (51%), Gaps = 6/141 (4%)
Frame = +3
Query: 51 DIDEFRECFYLFAR--SGQI--TSLDELTVIMRSLGMSPTIQELAGYLKGKGGKMSFADF 218
D +++ F LF R +G+I TS+ +L +R+ G +PT+ E+ ++ F
Sbjct: 4 DDSPYKQAFSLFDRHGTGRIPKTSIGDL---LRACGQNPTLAEITEIESTLPAEVDMEQF 60
Query: 219 LEVMHIHSRAE--NLPSEVVNAFKAGDPNKTGVISAKQLRTLLQKWGEGLSAREVDNIFR 392
L+V++ + + P E V F+ D + TG+I +LR +L GE LS E+D + +
Sbjct: 61 LQVLNRPNGFDMPGDPEEFVKGFQVFDKDATGMIGVGELRYVLTSLGEKLSNEEMDELLK 120
Query: 393 EANVSNSATVRYEDFVKIACA 455
V + V Y DFV++ A
Sbjct: 121 GVPVKD-GMVNYHDFVQMILA 140
>SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit
Prp31|Schizosaccharomyces pombe|chr 2|||Manual
Length = 518
Score = 32.7 bits (71), Expect = 0.063
Identities = 15/54 (27%), Positives = 29/54 (53%)
Frame = +3
Query: 183 KGKGGKMSFADFLEVMHIHSRAENLPSEVVNAFKAGDPNKTGVISAKQLRTLLQ 344
+G G + L++ I A+ LPSEV N F + N ++++ +LR +++
Sbjct: 41 EGNGISAELENDLDITKISDSAQKLPSEVANKFNDNNENIYQLLNSTRLRDIIE 94
>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1513
Score = 25.8 bits (54), Expect = 7.3
Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 5/70 (7%)
Frame = -1
Query: 382 LSTSLAESPSPHFCRSVRSCLADITPVLFGSPA---LNAFTTSDGRF--SARECMCITSR 218
L + L+ SP P + ++S L D + +P L F + + S EC+ + S
Sbjct: 715 LRSVLSTSPKPQL-KVLKSLLVDAEKAMLTTPETVNLRDFVQNANSWIDSVNECLKVASL 773
Query: 217 KSANDIFPPL 188
K D PPL
Sbjct: 774 KRKKDKKPPL 783
>SPAC3C7.07c |||arginine-tRNA protein transferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 361
Score = 25.4 bits (53), Expect = 9.6
Identities = 14/51 (27%), Positives = 27/51 (52%)
Frame = -3
Query: 800 YIIVINIKINCCSLVSLKLDNGWTDLANFGLELFVEVQRRFKR*RKYENAR 648
Y+ N K +CCSL +++LD ++ ++ E ++ K+ KY N +
Sbjct: 25 YLYKPNGKTSCCSLYTIRLD-------SYNFKIAKEQKKAIKKWVKYVNGK 68
>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
orphan|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1563
Score = 25.4 bits (53), Expect = 9.6
Identities = 19/77 (24%), Positives = 32/77 (41%)
Frame = -1
Query: 421 TVALLETFASRKMLSTSLAESPSPHFCRSVRSCLADITPVLFGSPALNAFTTSDGRFSAR 242
++ + TF S K S ++ SPS S + + ++ + S A TTS A
Sbjct: 115 SMTAISTFTSGKEASYAIQASPSTFLPDSTTTSGSQVSNAVEASSTFVADTTSTSCNPAT 174
Query: 241 ECMCITSRKSANDIFPP 191
+ TS ++ PP
Sbjct: 175 VLIVTTSGSTSTSCPPP 191
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,261,390
Number of Sequences: 5004
Number of extensions: 66330
Number of successful extensions: 137
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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