Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30653
         (811 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   4.4  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   7.7  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   7.7  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = -2

Query: 219 GNPRTTSSPLCPSDNQPTPGLWDSCLMT 136
           G P+ T   L PS    +P L   CL T
Sbjct: 253 GRPKMTPQSLLPSQTGLSPYLRFGCLST 280


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -3

Query: 809 QYTYIIVINIKINCCSLVSLKLDNGWTD 726
           +++Y + I I I CC LV +   + W D
Sbjct: 240 EFSYYL-IQIYIPCCMLVIVSWVSFWLD 266


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -3

Query: 809 QYTYIIVINIKINCCSLVSLKLDNGWTD 726
           +++Y + I I I CC LV +   + W D
Sbjct: 240 EFSYYL-IQIYIPCCMLVIVSWVSFWLD 266


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 220,004
Number of Sequences: 438
Number of extensions: 4606
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25731924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)