Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30648
         (688 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC330.09 |||rRNA processing protein Enp2 |Schizosaccharomyces ...    30   0.36 
SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein L5|Sch...    29   0.83 
SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein L5|Schizo...    29   0.83 
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c...    28   1.1  
SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MB...    27   1.9  
SPAC1751.01c |gti1||gluconate transporter inducer Gti1|Schizosac...    27   2.5  
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T...    27   3.4  
SPBC800.14c |||DUF1772 family protein|Schizosaccharomyces pombe|...    26   4.4  
SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar...    26   4.4  
SPAP27G11.05c |vps41||vacuolar protein sorting-associated protei...    26   5.9  
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    26   5.9  
SPBC1271.14 |||glutamate N-acetyltransferase |Schizosaccharomyce...    26   5.9  
SPAC25G10.08 |||translation initiation factor eIF3b |Schizosacch...    25   7.8  

>SPCC330.09 |||rRNA processing protein Enp2 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 634

 Score = 29.9 bits (64), Expect = 0.36
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +3

Query: 420 IELSSIQPVEDTGLRVHCEEGPLCHGAAIPRSIPA 524
           +EL+ + P+E TGL +   EG   H   IP   PA
Sbjct: 325 VELNDVCPIEGTGLILTANEGSPMHAFYIPSLNPA 359


>SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein
           L5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 294

 Score = 28.7 bits (61), Expect = 0.83
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +2

Query: 53  DRVWHRALLSKLPSYGIPEGLCKWIASFWMG 145
           D V   A  S+LP YGI  GL  W A++  G
Sbjct: 72  DYVLAHAHSSELPRYGIKWGLANWTAAYATG 102


>SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein
           L5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 294

 Score = 28.7 bits (61), Expect = 0.83
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +2

Query: 53  DRVWHRALLSKLPSYGIPEGLCKWIASFWMG 145
           D V   A  S+LP YGI  GL  W A++  G
Sbjct: 72  DYVLAHAHSSELPRYGIKWGLANWTAAYATG 102


>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1142

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -3

Query: 251 IYRMKSVGESTEPCGTPALMV 189
           +YR KSV ES EP G P L +
Sbjct: 140 LYREKSVEESDEPSGIPILFI 160


>SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MBOAT
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 588

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 12/55 (21%), Positives = 27/55 (49%)
 Frame = +1

Query: 178 SDTMTINAGVPQGSVLSPTLFILYINDMLSIDGMHCYADDSTGDARYIGHQSLSR 342
           S  +T+ + VP+ S      FI Y + +LSI  + C+        ++  ++++ +
Sbjct: 39  SSRLTVRSAVPEKSAFGSIEFIFYFSVILSILTIACFKIHYVSSPKHPNYKNIEK 93


>SPAC1751.01c |gti1||gluconate transporter inducer
           Gti1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = -3

Query: 224 STEPCGTPALMVMVSEQSPSTTTVMLRPSKS*RSTCRDPRGFRKMVTS 81
           S++P GTP +       SPSTT V    + S     R P+  R+ ++S
Sbjct: 200 SSKPTGTPFVPKSPPSSSPSTTNVSNASTSSAPINPRAPQTRRESISS 247


>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 988

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +1

Query: 202 GVPQGSVLSPTLFILYINDML 264
           G+PQGS+LS  L   Y+ D++
Sbjct: 703 GIPQGSILSSFLCHFYMEDLI 723


>SPBC800.14c |||DUF1772 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 160

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -3

Query: 260 MSLIYRMKSVGESTEPCGTPALMVMVSEQ 174
           MSL+Y  +SVG  T PCG+   +  ++ Q
Sbjct: 1   MSLVYLFQSVGILT-PCGSAGAIAYITSQ 28


>SPMIT.06 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 807

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +1

Query: 202 GVPQGSVLSPTLFILYINDM 261
           G PQGS++SP L  +Y++ +
Sbjct: 420 GTPQGSIVSPILANIYLHQL 439


>SPAP27G11.05c |vps41||vacuolar protein sorting-associated protein
           Vps41|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 886

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 211 QGSVLSPTLFILYINDMLSIDGMHCY 288
           + S L+ +L  LY+ D + ID  H Y
Sbjct: 502 KSSTLTESLAFLYLEDNMPIDAFHLY 527


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
           Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
 Frame = +1

Query: 292 DDSTGDARYIGHQSLSRSVVQERRSKLVSEVENSLGRVSKWGESNLVQFNPLKTQVCAFT 471
           DDS   A Y   +S  RS+ Q  R++ ++        +  WGE+N V+F P   +V AF 
Sbjct: 343 DDSLESAEY-RWRSHMRSMTQFERAQQIALW------LLLWGEANNVRFMP---EVIAFL 392

Query: 472 AK-KDPFVMAPQFQGVS 519
            K    ++++P+ Q V+
Sbjct: 393 FKCAYDYIISPEAQNVT 409


>SPBC1271.14 |||glutamate N-acetyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 445

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +2

Query: 491 SWRRNSKEYPCNLPRVSGYLGSTFR 565
           SW  NS+E+P +L   +G +G   +
Sbjct: 134 SWTENSEEFPSSLVMSTGVIGQRLK 158


>SPAC25G10.08 |||translation initiation factor eIF3b
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 725

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = +3

Query: 555 RHFERCPVSESFGRQSQ 605
           ++FE CPVS++ GR S+
Sbjct: 353 QNFEWCPVSDALGRDSK 369


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,150,680
Number of Sequences: 5004
Number of extensions: 70043
Number of successful extensions: 214
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 214
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)