Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30648
(688 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_02_0297 - 13891954-13892556,13893019-13893855,13894179-138943... 37 0.013
07_03_1291 + 25545749-25546262,25546989-25547669,25547693-255477... 33 0.28
07_01_0242 + 1775704-1776797,1776839-1777759,1778312-1778412,177... 31 0.65
11_06_0183 - 20999343-20999865,21000351-21000748 30 2.0
02_02_0078 + 6587491-6588021,6588160-6589151,6592430-6592607,659... 30 2.0
09_02_0387 - 8375043-8375831,8376483-8376785,8414151-8414273 29 3.5
03_02_0935 - 12517564-12517650,12517995-12518060,12518156-125181... 29 3.5
08_01_1010 - 10215625-10216335,10216372-10216473 29 4.6
03_05_0815 + 27917516-27917767,27918024-27918110,27918281-279183... 29 4.6
06_03_0743 + 24069752-24070483,24071890-24072345 28 8.0
>06_02_0297 -
13891954-13892556,13893019-13893855,13894179-13894394,
13895455-13895874,13896198-13896506
Length = 794
Score = 37.1 bits (82), Expect = 0.013
Identities = 18/54 (33%), Positives = 28/54 (51%)
Frame = +2
Query: 2 ESKGEALAVSLDIAKAFDRVWHRALLSKLPSYGIPEGLCKWIASFWMGGASRSL 163
+SK E + + LD KAFD + H A+LS + G P +W+ + +S L
Sbjct: 446 QSKREIVLLKLDFEKAFDTIEHSAILSVMQHMGFPLKWIEWVQMVFSTASSAVL 499
>07_03_1291 +
25545749-25546262,25546989-25547669,25547693-25547751,
25549152-25549242,25549330-25549743,25550191-25550243,
25550947-25551177,25551492-25551708,25551790-25551890,
25552446-25552532,25553536-25553676,25553839-25553961,
25554070-25554522,25554931-25555308,25555410-25556060,
25556264-25556368,25556482-25556707,25557204-25557241
Length = 1520
Score = 32.7 bits (71), Expect = 0.28
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = +2
Query: 8 KGEALAVSLDIAKAFDRVWHRALLSKLPSYGIPEGLCKWI 127
K + L + LD AKAFD V ++L L G P+ WI
Sbjct: 33 KCQTLIIKLDFAKAFDSVNWQSLFQILSVKGFPDNWISWI 72
>07_01_0242 + 1775704-1776797,1776839-1777759,1778312-1778412,
1778770-1778900,1779530-1779788,1779823-1780098,
1780100-1781352
Length = 1344
Score = 31.5 bits (68), Expect = 0.65
Identities = 16/40 (40%), Positives = 19/40 (47%)
Frame = +2
Query: 8 KGEALAVSLDIAKAFDRVWHRALLSKLPSYGIPEGLCKWI 127
K + + V LD KAFD V +L L G PE WI
Sbjct: 1048 KCQTIIVKLDFTKAFDSVIWSSLFKILAVRGFPENWISWI 1087
>11_06_0183 - 20999343-20999865,21000351-21000748
Length = 306
Score = 29.9 bits (64), Expect = 2.0
Identities = 21/64 (32%), Positives = 28/64 (43%)
Frame = +3
Query: 39 SRRPSTGSGIGHFYRSYHLTESPRVSASGSLAFGWAEHHGRCRR*LF*YHDH*RWRSTRF 218
S P+TG G+ HFY+ E P+ W H C + F ++ RWRS
Sbjct: 76 SSAPTTGGGVPHFYK----LEFPKFDGKDD-PLNWLNH---CEQ-FFFRTENRRWRSGAD 126
Query: 219 GALP 230
G LP
Sbjct: 127 GNLP 130
>02_02_0078 +
6587491-6588021,6588160-6589151,6592430-6592607,
6592635-6592794,6592992-6593158,6593246-6593869
Length = 883
Score = 29.9 bits (64), Expect = 2.0
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = +1
Query: 163 VDGDCSDTMTINAGVPQGSVLSPTLFIL 246
++G+ +DT+ + G+ QG +SP LF+L
Sbjct: 301 INGELTDTVVPSRGIRQGDPISPYLFLL 328
>09_02_0387 - 8375043-8375831,8376483-8376785,8414151-8414273
Length = 404
Score = 29.1 bits (62), Expect = 3.5
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Frame = -2
Query: 210 WNASVN--GHGIRTVTVYNDRDAPPIQKLAIHLQRPSGI 100
WNA + GHG R + D +APP+++ + RP+GI
Sbjct: 252 WNAHICLLGHGPRKIRAEFDVNAPPVEEQPAQV-RPAGI 289
>03_02_0935 -
12517564-12517650,12517995-12518060,12518156-12518185,
12518279-12518377,12518578-12518673,12519221-12519271,
12519358-12519424,12519516-12519610,12519928-12520009,
12520609-12520658,12520741-12520791,12521749-12521832,
12521918-12522028,12522276-12522425,12522858-12522975,
12523118-12523290
Length = 469
Score = 29.1 bits (62), Expect = 3.5
Identities = 17/40 (42%), Positives = 23/40 (57%)
Frame = +3
Query: 501 AIPRSIPATFREYRDTWGRHFERCPVSESFGRQSQVGVQN 620
A+ R I FRE RDT+G R P + +G Q+Q +QN
Sbjct: 33 ALARPISTGFREERDTFGP--IRVPNDKLWGAQTQRSLQN 70
>08_01_1010 - 10215625-10216335,10216372-10216473
Length = 270
Score = 28.7 bits (61), Expect = 4.6
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = -1
Query: 427 SSIHPIWRLAPESSPLQTQVLIVSLAPRSERDSDGRYIAHPPCYHLH 287
S P+WR P Q + ++ +PR+ + + G + HP C LH
Sbjct: 223 SGTSPLWRRRRRHHPYQRRGSSIACSPRAVQVAGGHH-HHPRCAILH 268
>03_05_0815 + 27917516-27917767,27918024-27918110,27918281-27918394,
27919644-27919835,27919925-27921677,27921771-27922708,
27923587-27923859
Length = 1202
Score = 28.7 bits (61), Expect = 4.6
Identities = 15/33 (45%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Frame = +2
Query: 332 VSLGAWCKRDDQNLCL--KWRTLWGESPNGVNR 424
VS G WC R NLCL LWG+ +NR
Sbjct: 1078 VSFGVWCIRQILNLCLVESRPELWGKYTYVLNR 1110
>06_03_0743 + 24069752-24070483,24071890-24072345
Length = 395
Score = 27.9 bits (59), Expect = 8.0
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = -1
Query: 397 PESSPLQTQVLIVSLAPRSERDSDGRYIAHPPCYHLH 287
P S P++ + ++SL P + D D + H +H H
Sbjct: 53 PSSPPIREALPLLSLTPSTTHDDDHHHRRHDQDHHHH 89
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,931,325
Number of Sequences: 37544
Number of extensions: 519380
Number of successful extensions: 1502
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1454
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1502
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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