Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30639
         (730 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92829-6|CAB07346.1|  214|Caenorhabditis elegans Hypothetical pr...    28   5.9  
DQ917240-1|ABI94563.1| 1797|Caenorhabditis elegans four domain-t...    28   5.9  
AY555271-1|AAS65871.2| 1831|Caenorhabditis elegans four domain-t...    28   5.9  
AF045640-7|AAU05589.1|  978|Caenorhabditis elegans Novel channel...    28   5.9  
AF045640-6|AAU05588.1| 1562|Caenorhabditis elegans Novel channel...    28   5.9  
AF045640-5|AAM81121.1| 1913|Caenorhabditis elegans Novel channel...    28   5.9  
AF045640-4|AAU05590.1| 1861|Caenorhabditis elegans Novel channel...    28   5.9  

>Z92829-6|CAB07346.1|  214|Caenorhabditis elegans Hypothetical
           protein F10A3.7 protein.
          Length = 214

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
 Frame = -1

Query: 325 VHIFNDCKTTVRIKNNYKLVQSVYKALTIVYK--NSICK-MQVNIYI 194
           +H+F   K + ++  NYK +   + + TIVY   N  CK + +N++I
Sbjct: 27  IHLFLISKMSKQMFGNYKYLMFSFSSFTIVYSFVNFWCKPVVINVHI 73


>DQ917240-1|ABI94563.1| 1797|Caenorhabditis elegans four domain-type
           voltage-gatedion channel alpha-1 subunit protein.
          Length = 1797

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = -2

Query: 93  RYVQYVISLVYFFVFFFTNYIDFG*NLFSK 4
           R  Q V ++  FFVFF T Y  FG  LF +
Sbjct: 191 RSSQQVKNVTLFFVFFMTLYAIFGIQLFGR 220


>AY555271-1|AAS65871.2| 1831|Caenorhabditis elegans four domain-type
           voltage-gatedion channel alpha-1 subunit protein.
          Length = 1831

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = -2

Query: 93  RYVQYVISLVYFFVFFFTNYIDFG*NLFSK 4
           R  Q V ++  FFVFF T Y  FG  LF +
Sbjct: 191 RSSQQVKNVTLFFVFFMTLYAIFGIQLFGR 220


>AF045640-7|AAU05589.1|  978|Caenorhabditis elegans Novel channel
           type/putative nematodecalcium channel protein 1, isoform
           b protein.
          Length = 978

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = -2

Query: 93  RYVQYVISLVYFFVFFFTNYIDFG*NLFSK 4
           R  Q V ++  FFVFF T Y  FG  LF +
Sbjct: 249 RSSQQVKNVTLFFVFFMTLYAIFGIQLFGR 278


>AF045640-6|AAU05588.1| 1562|Caenorhabditis elegans Novel channel
           type/putative nematodecalcium channel protein 1, isoform
           a protein.
          Length = 1562

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = -2

Query: 93  RYVQYVISLVYFFVFFFTNYIDFG*NLFSK 4
           R  Q V ++  FFVFF T Y  FG  LF +
Sbjct: 249 RSSQQVKNVTLFFVFFMTLYAIFGIQLFGR 278


>AF045640-5|AAM81121.1| 1913|Caenorhabditis elegans Novel channel
           type/putative nematodecalcium channel protein 1, isoform
           c protein.
          Length = 1913

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = -2

Query: 93  RYVQYVISLVYFFVFFFTNYIDFG*NLFSK 4
           R  Q V ++  FFVFF T Y  FG  LF +
Sbjct: 249 RSSQQVKNVTLFFVFFMTLYAIFGIQLFGR 278


>AF045640-4|AAU05590.1| 1861|Caenorhabditis elegans Novel channel
           type/putative nematodecalcium channel protein 1, isoform
           d protein.
          Length = 1861

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = -2

Query: 93  RYVQYVISLVYFFVFFFTNYIDFG*NLFSK 4
           R  Q V ++  FFVFF T Y  FG  LF +
Sbjct: 221 RSSQQVKNVTLFFVFFMTLYAIFGIQLFGR 250


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,580,435
Number of Sequences: 27780
Number of extensions: 294548
Number of successful extensions: 613
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 609
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 613
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)