Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30633
         (735 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC409.15 |||rRNA processing protein Tsr2 |Schizosaccharomyces ...    29   0.52 
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo...    27   2.8  
SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces pomb...    27   3.7  
SPBC2G5.02c |||CK2 family regulatory subunit |Schizosaccharomyce...    26   4.8  
SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2 |Schizo...    26   4.8  
SPBC17D1.02 |||diphthamide biosynthesis protein |Schizosaccharom...    26   4.8  
SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces p...    26   6.4  
SPAC25G10.05c |his1||ATP phosphoribosyltransferase |Schizosaccha...    25   8.5  

>SPBC409.15 |||rRNA processing protein Tsr2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 179

 Score = 29.5 bits (63), Expect = 0.52
 Identities = 16/57 (28%), Positives = 27/57 (47%)
 Frame = +2

Query: 368 DVGDASDDEKDMSAADAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMYGRNE 538
           +VG   DD   + A D   VW    E +++    I+   G ++++  +EGK   R E
Sbjct: 78  NVGSIEDDSPYILAQDLVNVWKAACEDNYEPIREIHERLG-KQLLEKEEGKEKTREE 133


>SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1369

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
 Frame = +1

Query: 130  LHGVIVFCVLWTVIIQNFIQD--VSDKWNYF 216
            LH  +V C L +VI QNF     +S  W +F
Sbjct: 1152 LHRKVVICFLISVINQNFWMSTLISQAWRFF 1182


>SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 782

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = -1

Query: 564 LSLIYLAINSFLPYILPSSERIILRRPQGGYIASASWKLCSMSG 433
           L+LIYL    F PY+  +S  I  +          +W+LC + G
Sbjct: 708 LNLIYLLAAIFYPYMPSTSTSIYKQLNAPAAAIPDTWELCLLPG 751


>SPBC2G5.02c |||CK2 family regulatory subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 254

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -1

Query: 210 IPFVTYVLDKILNNNSP*HTENYHTV*ISISNTVNLFIIHSR 85
           +PF    LD IL+  +P   EN+    I  S  +   +IH R
Sbjct: 75  VPFYNEALDLILDRTAPDTLENFDMDVIETSAQILYGLIHQR 116


>SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1010

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 5/84 (5%)
 Frame = +2

Query: 374 GDASDDEKDMSAADA--EGVWSPDIEQSFQEALAIYPPCGRRKII---LSDEGKMYGRNE 538
           G+ SD+E +    DA  E ++S D E+   E      P G  K++   L +    YG  E
Sbjct: 117 GEGSDNEDEDEDIDALIEDLYSQDQEEEQVEEEESPGPAGAAKVVPEELLETDPKYGLTE 176

Query: 539 LIARYIKLRTGKTRTRKQVSSHIQ 610
                 K + G  + +++ +++I+
Sbjct: 177 SEVEERKKKYGLNQMKEEKTNNIK 200


>SPBC17D1.02 |||diphthamide biosynthesis protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 503

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +2

Query: 350 ADAKHLDVGDASDDEKDMSAADAEGVWSP 436
           ADAK+ D   AS +++ M +    GV+SP
Sbjct: 424 ADAKNNDSSSASIEKRGMRSLAVNGVYSP 452


>SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 390

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 588 NKSRHTYRC*LGENYEKFKPNLKCNFG 668
           N  +  +R  L E+Y+KF PN K + G
Sbjct: 95  NDLKDRFRTILPEDYKKFYPNAKTHMG 121


>SPAC25G10.05c |his1||ATP phosphoribosyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 310

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = -3

Query: 565 P*FNIPRY*LVPSVHLALVGENNFASSTGRVYRQRLLEALFDV 437
           P  +IPR+     VHL + G++  A +  R+  +  +E L D+
Sbjct: 58  PAADIPRFVGTGRVHLGITGQDQIAEARLRIGDKLKIEELVDL 100


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,799,868
Number of Sequences: 5004
Number of extensions: 52924
Number of successful extensions: 152
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)