Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30633
         (735 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    26   0.32 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    26   0.32 
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    23   3.9  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    23   3.9  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   5.2  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    22   6.9  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 26.2 bits (55), Expect = 0.32
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +2

Query: 218  VISTVTMHPAGYYANLASGALAAGTIASPWSTP 316
            ++ T    PAG   NL + AL++  I   WS P
Sbjct: 998  IVRTEPQRPAGPPINLEARALSSSEILITWSPP 1030


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 26.2 bits (55), Expect = 0.32
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +2

Query: 218  VISTVTMHPAGYYANLASGALAAGTIASPWSTP 316
            ++ T    PAG   NL + AL++  I   WS P
Sbjct: 994  IVRTEPQRPAGPPINLEARALSSSEILITWSPP 1026


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +2

Query: 272 GALAAGTIASPWSTPAG 322
           G L +GT+ +PWS  +G
Sbjct: 275 GILQSGTLNAPWSYMSG 291


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +2

Query: 272 GALAAGTIASPWSTPAG 322
           G L +GT+ +PWS  +G
Sbjct: 275 GILQSGTLNAPWSYMSG 291


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +3

Query: 474 TRPVDDAKLFSPTRARCTEGT 536
           TRPV   ++ SP RAR    T
Sbjct: 168 TRPVSYPQIMSPRRARLLVAT 188


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = +2

Query: 224 STVTMHPAGYYANLASGALAAGTIASPWSTPAGAPDTNGSGGA 352
           +++T+  A    +LA  +  A    +P S P G+     +GGA
Sbjct: 28  ASLTLVKAETPEHLAGTSTTAAATPTPPSVPVGSAVAGTAGGA 70


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,368
Number of Sequences: 438
Number of extensions: 3640
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22901220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)