Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30632
         (644 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces...    27   2.3  
SPAC6F12.11c |sfc1||transcription factor TFIIIC complex A box as...    25   7.1  
SPAC806.07 |ndk1||nucleoside diphosphate kinase|Schizosaccharomy...    25   9.3  
SPAC4C5.03 |||CTNS domain protein |Schizosaccharomyces pombe|chr...    25   9.3  

>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1485

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 567  HGLDAFGHSWRGPTDRVRHEVVFE 496
            H LDAF H+W    D ++ E++ E
Sbjct: 1193 HDLDAFEHAWNKVMDDIQREMLEE 1216


>SPAC6F12.11c |sfc1||transcription factor TFIIIC complex A box
           associated subunit Sfc1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 456

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 222 PTLLPLLKSKQMRSSSNLRSVSW 290
           PT+ PLLK  Q+RS  + R   W
Sbjct: 329 PTIAPLLKDTQLRSECH-RDTGW 350


>SPAC806.07 |ndk1||nucleoside diphosphate kinase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 151

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -1

Query: 125 GIAKPLPTVKHSPQASYEEEIVR*NCHNSSLIESCN 18
           G + PL +   + +  Y  ++ R  CH S  IES N
Sbjct: 91  GASNPLDSAPGTIRGDYGIDLGRNVCHGSDSIESAN 126


>SPAC4C5.03 |||CTNS domain protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 302

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 8/30 (26%), Positives = 15/30 (50%)
 Frame = -3

Query: 285 TRIEGSNWNAFACFLVMATMWAYNFFYCSF 196
           +R+ G+NW  +  ++V A +       C F
Sbjct: 236 SRLPGTNWTTYMMYIVSACLQGLLLMLCMF 265


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,892,753
Number of Sequences: 5004
Number of extensions: 62252
Number of successful extensions: 136
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)