Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30632
         (644 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0903 - 28652447-28653346,28653890-28654056,28654075-286542...    32   0.45 
01_06_0102 - 26447286-26448107,26448248-26448385,26448990-264493...    29   3.2  
09_06_0317 - 22265786-22267618,22267874-22268446,22268546-222686...    29   4.2  
06_01_0734 + 5419951-5420475                                           29   4.2  
04_03_0905 - 20722090-20722207,20722314-20722395,20722698-207228...    29   4.2  
05_04_0186 + 18866762-18866949,18867207-18867345,18868068-188682...    28   5.5  

>03_05_0903 -
           28652447-28653346,28653890-28654056,28654075-28654264,
           28654916-28655210,28655514-28655760,28656017-28656443
          Length = 741

 Score = 31.9 bits (69), Expect = 0.45
 Identities = 12/27 (44%), Positives = 21/27 (77%)
 Frame = +1

Query: 496 LEDYFMTDPISRASPTMAKCIQAVIKQ 576
           +E+++MTD I+RAS  MA+C   ++K+
Sbjct: 715 VENFYMTDAITRASKIMAQCSATLLKK 741


>01_06_0102 - 26447286-26448107,26448248-26448385,26448990-26449359,
            26449505-26449606,26449696-26449788,26449934-26450181,
            26451088-26451274,26451825-26452043,26452464-26452660,
            26453545-26453875,26454099-26454457,26455141-26455240,
            26455349-26455464,26455547-26455663,26455782-26455880,
            26456057-26456131,26456205-26456286,26457724-26457763,
            26458685-26458769,26458924-26459055
          Length = 1303

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = -1

Query: 422  HPYYVIDTRYKTRISFFLHQGRPTNR*LEVKW--LLETTKVHTTT 294
            H   V D +  TRI +F   GRP+ R L + W  +L+    HT T
Sbjct: 1028 HSQNVCDYQTLTRIFYFQAHGRPSLRNLVIAWNKMLQKELDHTPT 1072


>09_06_0317 -
           22265786-22267618,22267874-22268446,22268546-22268677,
           22268931-22269137,22269287-22269388,22270742-22271032
          Length = 1045

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 7/48 (14%)
 Frame = -1

Query: 200 LSGKQAYDPP-DGELLPSPMDFSNARGIA------KPLPTVKHSPQAS 78
           L GK   +P  D E+LP    FS++RG +      KPLP +   P+ S
Sbjct: 441 LHGKHEVEPRIDREMLPEGQPFSSSRGSSLWLSHEKPLPDIVSDPRIS 488


>06_01_0734 + 5419951-5420475
          Length = 174

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 20/53 (37%), Positives = 25/53 (47%)
 Frame = +1

Query: 16  VLQLSIRELL*QFQRTISSSYEACGECLTVGSGLAMPLALLKSMGDGNNSPSG 174
           +L LS   L+   Q   +S+  A  +    G GL   LA L  MGDG  SP G
Sbjct: 78  LLILSPLLLIVAVQVWAASAAAAAADRRGAGGGLMYLLAQLMGMGDGGGSPYG 130


>04_03_0905 -
           20722090-20722207,20722314-20722395,20722698-20722851,
           20723026-20723089,20724282-20724404,20725326-20725452,
           20725541-20726171
          Length = 432

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 16/48 (33%), Positives = 20/48 (41%)
 Frame = +1

Query: 82  ACGECLTVGSGLAMPLALLKSMGDGNNSPSGGSYACLPERAIKKIISP 225
           A GE    G  +A P+ L +  G G     GG  AC P R     + P
Sbjct: 90  ASGEAAASGEPVAAPVELPR--GGGGGGGGGGRGACAPSRCRTTAVQP 135


>05_04_0186 +
           18866762-18866949,18867207-18867345,18868068-18868295,
           18869023-18869081,18869411-18869482,18870239-18870287,
           18870431-18870661,18872018-18872187,18872274-18872478,
           18872826-18873494,18873592-18873819,18873901-18874689
          Length = 1008

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +3

Query: 354 WSALM*KKTYSGLVSGIYNVIWMA*KYINFTEPSE 458
           WS  + KK   G ++ + N IW   KYI +++P +
Sbjct: 616 WSIPIFKKRIDGYINEVPNPIWDYHKYIPYSKPGK 650


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,815,505
Number of Sequences: 37544
Number of extensions: 420898
Number of successful extensions: 903
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 892
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 903
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)