Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30632
         (644 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   2.5  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     23   2.5  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   5.8  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 301 VCTFVVSSNHLTSSHLLVGLP*CKKK 378
           VCT  VSS ++T +   +G+   KKK
Sbjct: 126 VCTVEVSSENMTVTFANLGIQCVKKK 151


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 301 VCTFVVSSNHLTSSHLLVGLP*CKKK 378
           VCT  VSS ++T +   +G+   KKK
Sbjct: 126 VCTVEVSSENMTVTFANLGIQCVKKK 151


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 12/37 (32%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
 Frame = +2

Query: 86  VGSA*Q*AAAWLCPWHC*N-PWATVTTHHQVGRMLVC 193
           VG A +  A   C WHC N     +  H  V + + C
Sbjct: 593 VGQAKKYVAGEQCCWHCFNCTQYQIRDHKDVTQCISC 629


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,717
Number of Sequences: 438
Number of extensions: 4671
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19438227
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)