Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30626
(561 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0064 - 19375497-19375580,19375659-19375733,19376359-193765... 148 3e-36
04_03_0846 - 20249085-20249192,20249418-20249501,20249687-202498... 136 1e-32
06_03_1473 - 30382528-30382731,30382814-30382930,30383048-303831... 102 2e-22
08_01_0727 + 6567935-6568112,6568197-6568912,6569061-6569162,656... 31 0.83
06_02_0364 + 15178583-15178881,15179652-15179723,15179853-151799... 30 1.5
06_01_0498 + 3570543-3571136,3579620-3580348 29 3.4
06_01_0495 - 3546131-3547588 29 3.4
02_04_0329 + 22081052-22082434 28 4.4
01_06_1258 + 35806557-35806932,35807517-35807679,35807789-358078... 28 4.4
01_05_0509 + 22811184-22812038,22813493-22814020 28 4.4
01_05_0127 - 18401461-18401464,18401868-18403876,18404060-184042... 28 4.4
03_04_0090 + 17228253-17228403,17229062-17229129,17229238-172309... 28 5.9
>02_04_0064 -
19375497-19375580,19375659-19375733,19376359-19376514,
19377016-19377093,19377328-19377428,19377570-19377717,
19378172-19378316,19378803-19378906,19380257-19380385,
19380526-19380636,19380734-19380863,19381915-19382034,
19382360-19382481,19382965-19383048,19383241-19383357,
19383442-19383522,19384138-19384197,19384398-19384440,
19384528-19384626,19385353-19385564,19385964-19386091,
19386246-19386396
Length = 825
Score = 148 bits (358), Expect = 3e-36
Identities = 74/187 (39%), Positives = 111/187 (59%), Gaps = 6/187 (3%)
Frame = +1
Query: 19 PVPDLEKLLERDGYLKPYEREIRRRYACYKDIWDRIESWDGGLEAFTKGYKYYGPQFNQD 198
P D +K+ + D L Y+ + RY+ Y+ + I+ ++GGLE F++GY+ +G + +
Sbjct: 140 PTGDGQKIFQMDSMLNGYKYHLEYRYSLYRRLRSDIDQYEGGLETFSRGYEKFGFNHSAE 199
Query: 199 GSVTWREWAPGAHSLHLRGEFNGWDSKSHPFAKKEYGKWEIQIPANPDGSCALKHDSRVQ 378
G VT+REWAPGAHS L G+FN W+ + +K E+G WEI +P N DGS + H SRV+
Sbjct: 200 G-VTYREWAPGAHSAALVGDFNNWNPNADRMSKNEFGVWEIFLPNNADGSSPIPHGSRVK 258
Query: 379 IIV---NDNLYRISPWASY-VKPHEGFTYQHFIYKP--EQPYKFKHPKVDKPKSLRIYEC 540
+ + + I W Y V+ Y Y P E+ Y FKHP+ +PKSLRIYE
Sbjct: 259 VRMETPSGIKDSIPAWIKYSVQAAGEIPYNGIYYDPPEEEKYIFKHPQPKRPKSLRIYET 318
Query: 541 HVGIATS 561
HVG++++
Sbjct: 319 HVGMSST 325
>04_03_0846 -
20249085-20249192,20249418-20249501,20249687-20249803,
20249899-20249979,20250563-20250622,20250762-20250804,
20250899-20250997,20251260-20251531,20251765-20251886,
20252376-20252517
Length = 375
Score = 136 bits (328), Expect = 1e-32
Identities = 72/191 (37%), Positives = 109/191 (57%), Gaps = 7/191 (3%)
Frame = +1
Query: 7 PMEVPVP-DLEKLLERDGYLKPYEREIRRRYACYKDIWDRIESWDGGLEAFTKGYKYYGP 183
P +P P D +K+ + D L+ + + RY+ YK + I+ +GGL+AF++GY+ G
Sbjct: 150 PRVIPPPGDGQKIYQIDPMLEGFRNHLDYRYSEYKRMRAAIDQHEGGLDAFSRGYEKLGF 209
Query: 184 QFNQDGSVTWREWAPGAHSLHLRGEFNGWDSKSHPFAKKEYGKWEIQIPANPDGSCALKH 363
+ +G +T+REWAPGA S L G+FN W+ + + EYG WEI +P N DGS A+ H
Sbjct: 210 TRSAEG-ITYREWAPGAQSAALVGDFNNWNPNADTMTRNEYGVWEISLPNNADGSPAIPH 268
Query: 364 DSRVQIIVNDN---LYRISPWASYVKPHEG-FTYQHFIYKP--EQPYKFKHPKVDKPKSL 525
SRV+I ++ I W + G Y Y P E+ Y F+HP+ +P SL
Sbjct: 269 GSRVKIRMDTPSGVKDSIPAWIKFAVQAPGEIPYNGIYYDPPEEEKYVFQHPQPKRPNSL 328
Query: 526 RIYECHVGIAT 558
RIYE H+G+++
Sbjct: 329 RIYESHIGMSS 339
>06_03_1473 -
30382528-30382731,30382814-30382930,30383048-30383129,
30383211-30383278,30383444-30383545,30383994-30384122,
30384561-30384623,30384781-30384897,30385210-30386116,
30386225-30386494,30386929-30386998,30387114-30387273
Length = 762
Score = 102 bits (245), Expect = 2e-22
Identities = 62/181 (34%), Positives = 92/181 (50%), Gaps = 9/181 (4%)
Frame = +1
Query: 40 LLERDGYLKPYEREIRRRYACYKDIWDRIESWDGGLEAFTKGYKYYGPQFNQDGSVTWRE 219
+ + D L+ ++ R Y D IE +GGLE F+KGY +G DG+ +RE
Sbjct: 13 IYDLDPKLEEFKDHFNYRIKRYLDQKCLIEKHEGGLEEFSKGYLKFGIN-TVDGATIYRE 71
Query: 220 WAPGAHSLHLRGEFNGWDSKSHPFAKKEYGKWEIQIPANPDGSCALKHDSRVQIIVNDN- 396
WAP A L GEFN W+ H K ++G W I+I ++ +G A+ H+S+V+
Sbjct: 72 WAPAAQEAQLIGEFNNWNGAKHKMEKDKFGIWSIKI-SHVNGKPAIPHNSKVKFRFRHGG 130
Query: 397 ---LYRISPW---ASYVKPHEGFTYQHFIYKPE--QPYKFKHPKVDKPKSLRIYECHVGI 552
+ RI W A++ G Y + P + Y FKHP+ KP + RIYE HVG+
Sbjct: 131 GAWVDRIPAWIRYATFDASKFGAPYDGVHWDPPACERYVFKHPRPPKPDAPRIYEAHVGM 190
Query: 553 A 555
+
Sbjct: 191 S 191
>08_01_0727 +
6567935-6568112,6568197-6568912,6569061-6569162,
6569236-6569547,6569862-6570299
Length = 581
Score = 30.7 bits (66), Expect = 0.83
Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Frame = +1
Query: 229 GAHS-LHLRGEFNGWDSKSHPFAKKEYGKWEIQIPANPDGSCALKHDSRVQIIVNDNLYR 405
G H L +R F W SK+ F + G +++ P P + H+ +I+N N Y+
Sbjct: 437 GVHQKLCIRAPFGNWQSKNEKFVAVK-GLPKVRCPFRP-----VYHE----MIINGNSYK 486
Query: 406 ISPWASYVKPHEGFTYQHF 462
+ A +++ H G T + +
Sbjct: 487 VLKVAGWMRVHPGRTLEDY 505
>06_02_0364 +
15178583-15178881,15179652-15179723,15179853-15179917,
15180890-15180934,15182493-15183170,15183376-15183410,
15183647-15183736,15183896-15183985,15184164-15184262,
15184938-15185013,15185473-15185588
Length = 554
Score = 29.9 bits (64), Expect = 1.5
Identities = 16/58 (27%), Positives = 28/58 (48%)
Frame = +1
Query: 64 KPYEREIRRRYACYKDIWDRIESWDGGLEAFTKGYKYYGPQFNQDGSVTWREWAPGAH 237
+ + + +R RY KD + S L+ + G++ G ++ V + EWAPG H
Sbjct: 91 RAFAQFLRDRYKALKDRRWELHSRLIDLKEASSGFELMGMHRHRQHRVDFMEWAPGHH 148
>06_01_0498 + 3570543-3571136,3579620-3580348
Length = 440
Score = 28.7 bits (61), Expect = 3.4
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = +3
Query: 321 SNPRKSRWFVCIE--TRLPCPNHSERQLVQDITVGQLRE 431
+ P R+ +C E PCP ERQ + DI G+L E
Sbjct: 280 TTPGIVRFDMCSEEFASFPCPPFMERQKMSDIACGELTE 318
>06_01_0495 - 3546131-3547588
Length = 485
Score = 28.7 bits (61), Expect = 3.4
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Frame = +3
Query: 321 SNPRKSRWFVCIE--TRLPCPNHSERQLVQDITVGQLRE 431
+ P R+ VC E PCP ERQ + D+ G L E
Sbjct: 325 TTPGIVRFDVCSEEFASFPCPPFMERQKMSDVACGDLTE 363
>02_04_0329 + 22081052-22082434
Length = 460
Score = 28.3 bits (60), Expect = 4.4
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +1
Query: 301 EYGKWEIQIPANPDGSCALKHDSRVQIIVNDNLYRISPWAS 423
E WE DG A + +++ I+VN+ LY + P +S
Sbjct: 322 ELNSWETMADGLGDGWPARQAGTKLGIVVNEELYTLEPSSS 362
>01_06_1258 +
35806557-35806932,35807517-35807679,35807789-35807837,
35807943-35808866,35808954-35809049,35809142-35809257,
35809345-35809447,35809570-35809658,35809750-35809900,
35809995-35810141,35810238-35810366,35810451-35810529,
35810616-35810725
Length = 843
Score = 28.3 bits (60), Expect = 4.4
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = -1
Query: 525 KRLWLVYLWMLEFVGLF 475
KR+WLV LW+ VGLF
Sbjct: 291 KRIWLVALWLAVNVGLF 307
>01_05_0509 + 22811184-22812038,22813493-22814020
Length = 460
Score = 28.3 bits (60), Expect = 4.4
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -1
Query: 516 WLVYLWMLEFVGLFWLINKMLISKTLVWLHVTG 418
WL L ML +V L++ + ++ +LVW V G
Sbjct: 205 WLKNLSMLAYVSAVGLVSSVALTASLVWAGVAG 237
>01_05_0127 -
18401461-18401464,18401868-18403876,18404060-18404237,
18404381-18404958,18405609-18405611
Length = 923
Score = 28.3 bits (60), Expect = 4.4
Identities = 11/19 (57%), Positives = 16/19 (84%), Gaps = 1/19 (5%)
Frame = +1
Query: 100 CYKDIWDRIESWDG-GLEA 153
C KD+WD++E W+G G+EA
Sbjct: 882 CEKDVWDKLE-WNGDGMEA 899
>03_04_0090 +
17228253-17228403,17229062-17229129,17229238-17230902,
17231002-17231143,17231648-17232399
Length = 925
Score = 27.9 bits (59), Expect = 5.9
Identities = 17/77 (22%), Positives = 35/77 (45%)
Frame = +2
Query: 107 KTFGTVSNHGTVA*KHSRRATNTTDPNLIRMAPLRGASGLQERIAYIFEVNSMDGTRRAI 286
K+ TVS G + +HS+ +N+ + N++ + + Q + + N ++ I
Sbjct: 557 KSKETVSPRGRLRSRHSQTKSNSDNDNVLHIPETKINLAKQIDVGVVDHPNPLNANSPYI 616
Query: 287 HSLKRSTANGRFKSPQI 337
H K ++ R + P I
Sbjct: 617 HQSKIASTPNREEMPTI 633
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,512,471
Number of Sequences: 37544
Number of extensions: 409528
Number of successful extensions: 928
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 899
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 922
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1281410928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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