Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30620
(675 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB8E5.09 |||AAA family ATPase Rvb1 |Schizosaccharomyces pombe... 285 5e-78
SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|c... 155 6e-39
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 44 2e-05
SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz... 41 2e-04
SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p... 39 6e-04
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||... 39 6e-04
SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo... 39 8e-04
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb... 39 8e-04
SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schiz... 38 0.001
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos... 38 0.001
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac... 38 0.002
SPCC576.10c |rpt3||19S proteasome regulatory subunit Rpt3|Schizo... 37 0.003
SPAC1834.11c |sec18||secretory pathway protein Sec18 |Schizosacc... 37 0.003
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos... 36 0.005
SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|S... 36 0.007
SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schi... 35 0.009
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 35 0.009
SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po... 35 0.012
SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce... 34 0.022
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 33 0.038
SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces po... 32 0.087
SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1 |Schiz... 32 0.087
SPAC14C4.13 |rad17||RFC related checkpoint protein Rad17|Schizos... 32 0.087
SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr 2|... 31 0.15
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 31 0.20
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc... 30 0.27
SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit ... 30 0.27
SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex... 30 0.27
SPAC4G9.03 |adk1||adenylate kinase Adk1|Schizosaccharomyces pomb... 30 0.35
SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha... 29 0.46
SPAC23D3.02 |rfc2||DNA replication factor C complex subunit Rfc2... 29 0.46
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po... 29 0.46
SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78 |Schizosacch... 29 0.61
SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A |S... 29 0.81
SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomy... 28 1.1
SPAC4G9.12 |||gluconokinase|Schizosaccharomyces pombe|chr 1|||Ma... 28 1.1
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 28 1.4
SPCC1322.09 |||conserved fungal protein|Schizosaccharomyces pomb... 27 2.5
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|... 27 2.5
SPAC630.09c |mug58||glycerate kinase |Schizosaccharomyces pombe|... 27 2.5
SPCC830.11c |||adenylate kinase |Schizosaccharomyces pombe|chr 3... 27 3.3
SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ... 27 3.3
SPCC162.11c |||uridine kinase |Schizosaccharomyces pombe|chr 3||... 26 4.3
SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated heterochr... 26 4.3
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S... 26 5.7
SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subuni... 26 5.7
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo... 26 5.7
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch... 26 5.7
SPAC27F1.07 |||dolichyl-diphospho-oligosaccharide-protein glycos... 26 5.7
SPBC17D1.03c |||exosome subunit Rrp43 |Schizosaccharomyces pombe... 25 7.6
SPAPB24D3.08c |||NADP-dependent oxidoreductase |Schizosaccharomy... 25 7.6
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 25 7.6
SPBC1861.09 |ppk22||serine/threonine protein kinase Ppk22 |Schiz... 25 10.0
>SPAPB8E5.09 |||AAA family ATPase Rvb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 456
Score = 285 bits (698), Expect = 5e-78
Identities = 132/188 (70%), Positives = 155/188 (82%)
Frame = +2
Query: 77 MKIEEVKSTAKTQRISAHSHIKGLGLDENGVPIQMAAGLVGQESAREAAGIVVDMIRSKK 256
++I EVK + RI+ HSHIKGLGL E+G + G +GQE AREA GI+ D+I+SKK
Sbjct: 2 VQISEVKGNGRDNRITTHSHIKGLGLKEDGTCESVGGGFIGQEKAREACGIITDLIKSKK 61
Query: 257 MAGRALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTEVLMENFRRAI 436
G+ +L AG GTGKTA+ALAIAQELG KVPFCPMVGSEVYS+EIKKTE LMENFRRAI
Sbjct: 62 FGGKGVLFAGGAGTGKTALALAIAQELGPKVPFCPMVGSEVYSSEIKKTEALMENFRRAI 121
Query: 437 GLRIRETKEVYEGEVTELTPVETENPAGGYGKTVSHVIIGLKTAKGTKQLKLDPTIYESL 616
GLR++ETKEVYEGEVTE+ P E ENP GGYGKT+SHV++GLKT KGTKQLKLDP+IYESL
Sbjct: 122 GLRVKETKEVYEGEVTEMVPEEAENPLGGYGKTISHVLLGLKTHKGTKQLKLDPSIYESL 181
Query: 617 QKEKVKLG 640
Q+E+V G
Sbjct: 182 QREQVSTG 189
Score = 28.7 bits (61), Expect = 0.81
Identities = 12/13 (92%), Positives = 13/13 (100%)
Frame = +1
Query: 637 GDVIYIEANSGAV 675
GDVIYIEAN+GAV
Sbjct: 189 GDVIYIEANTGAV 201
>SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 465
Score = 155 bits (376), Expect = 6e-39
Identities = 83/201 (41%), Positives = 124/201 (61%), Gaps = 1/201 (0%)
Frame = +2
Query: 74 NMKIEEVKSTAKTQRISAHSHIKGLGLDENGVPIQMAAGLVGQESAREAAGIVVDMIRSK 253
++ + +K +RI AHSHIKG+GL++N P + + G+VGQ AR AAG+++ MI+
Sbjct: 2 SISVTSHNDVSKLERIGAHSHIKGIGLNDNLEPKESSQGMVGQVKARRAAGVILKMIQEG 61
Query: 254 KMAGRALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTEVLMENFRRA 433
++AGRA+L+AGPP TGKTAIA+ +AQ LG+ PF + SEVYS E+ KTE L++ R++
Sbjct: 62 RIAGRAILMAGPPSTGKTAIAMGMAQSLGSDTPFVTLSASEVYSLEMSKTEALLQALRKS 121
Query: 434 IGLRIRETKEVYEGEVTELTPVETENPAGGYGK-TVSHVIIGLKTAKGTKQLKLDPTIYE 610
IG+RI+E E+ EGEV E+ + GK T+ + GTK + +
Sbjct: 122 IGVRIKEETEIIEGEVVEVQIDRSITGGNKQGKLTIRSTDMETVYDLGTKMI-------D 174
Query: 611 SLQKEKVKLGMSFTLKLILGQ 673
SL KEKV G ++ +G+
Sbjct: 175 SLTKEKVLAGDVISIDKSVGR 195
>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 709
Score = 44.4 bits (100), Expect = 2e-05
Identities = 29/82 (35%), Positives = 46/82 (56%), Gaps = 7/82 (8%)
Frame = +2
Query: 152 LDENGVPIQMAAGLVGQESAREAAGIVVDMIRSK----KMAG---RALLLAGPPGTGKTA 310
++E + ++ + + G + A+E +VD +R ++ G R +LL GPPGTGKT
Sbjct: 257 MEERAINVRFS-DVQGVDEAKEELEEIVDFLRDPTHFTRLGGKLPRGVLLTGPPGTGKTM 315
Query: 311 IALAIAQELGTKVPFCPMVGSE 376
+A A+A E VPF M GS+
Sbjct: 316 LARAVAGE--ANVPFFFMSGSQ 335
>SPBC56F2.07c |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 40.7 bits (91), Expect = 2e-04
Identities = 30/99 (30%), Positives = 48/99 (48%), Gaps = 1/99 (1%)
Frame = +2
Query: 257 MAGRALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTEV-LMENFRRA 433
M R +LL GPPGTGKT + A+A E +V + G V + +TE L + F A
Sbjct: 311 MPPRGVLLYGPPGTGKTMVMRAVAAEANAQV--FTIDGPSVVGKYLGETESRLRKIFEDA 368
Query: 434 IGLRIRETKEVYEGEVTELTPVETENPAGGYGKTVSHVI 550
R + ++ E+ L P TE+ + + V+ ++
Sbjct: 369 ---RAHQPSIIFIDEIDALAPKRTEDVSEAESRAVATLL 404
Score = 33.5 bits (73), Expect = 0.029
Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Frame = +2
Query: 266 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTE-VLMENFRRA 433
+ +LL GPPG KT A AIA E G + F + G E++ + ++E + + F++A
Sbjct: 583 KGVLLYGPPGCSKTITAKAIATETG--LNFIAVKGPELFDKFVGESERAVRQVFQKA 637
>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 773
Score = 39.1 bits (87), Expect = 6e-04
Identities = 20/37 (54%), Positives = 24/37 (64%)
Frame = +2
Query: 266 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSE 376
R +L+GPPGTGKT +A A A E VPF + GSE
Sbjct: 330 RGAILSGPPGTGKTLLAKATAGE--ANVPFLSVSGSE 364
>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 948
Score = 39.1 bits (87), Expect = 6e-04
Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Frame = +2
Query: 272 LLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTEVLMEN-FRRA 433
+LL GPPGTGKT +A A+A EL + F + G E+ + + ++E + N F +A
Sbjct: 691 VLLYGPPGTGKTLLAKAVATEL--SLEFVSIKGPELLNMYVGESEANVRNVFEKA 743
>SPCC1682.16 |rpt4||19S proteasome regulatory subunit
Rpt4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 388
Score = 38.7 bits (86), Expect = 8e-04
Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Frame = +2
Query: 266 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEI-KKTEVLMENF 424
+ +LL GPPGTGKT +A A+A LG V F +V S + I + ++ E F
Sbjct: 167 KGVLLYGPPGTGKTLLARAVAASLG--VNFLKVVSSAIVDKYIGESARIIREMF 218
>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 779
Score = 38.7 bits (86), Expect = 8e-04
Identities = 20/40 (50%), Positives = 25/40 (62%)
Frame = +2
Query: 266 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYS 385
R +LL GPPG GKT +A A+A ELG VPF + + S
Sbjct: 209 RGVLLHGPPGCGKTMLANALANELG--VPFISISAPSIVS 246
Score = 35.1 bits (77), Expect = 0.009
Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Frame = +2
Query: 260 AGRALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTE-VLMENFRRA 433
A +LL GPPG GKT +A A+A E +K F + G E+ + + ++E + + F RA
Sbjct: 525 APTGVLLWGPPGCGKTLLAKAVANE--SKANFISIRGPELLNKYVGESERAVRQVFLRA 581
>SPBC16C6.07c |rpt1||19S proteasome regulatory subunit
Rpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 38.3 bits (85), Expect = 0.001
Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Frame = +2
Query: 266 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEI-KKTEVLMENFRRAIGL 442
+ ++L GPPGTGKT A A+A T F ++GSE+ + + ++ E F A
Sbjct: 214 KGIMLYGPPGTGKTLCARAVANR--TDATFIRVIGSELVQKYVGEGARMVRELFEMA--- 268
Query: 443 RIRETKEVYEGEVTELTPVETENPAGG 523
R ++ ++ E+ + ++ AGG
Sbjct: 269 RTKKACIIFFDEIDAIGGARFDDGAGG 295
>SPAC328.04 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 38.3 bits (85), Expect = 0.001
Identities = 21/60 (35%), Positives = 35/60 (58%)
Frame = +2
Query: 236 DMIRSKKMAGRALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTEVLM 415
D+ + + R +LL GPPGTGKT +A A+A E ++ F + S + S + ++E L+
Sbjct: 483 DLFQGLREPARGMLLFGPPGTGKTMLARAVATE--SRSVFFSISASSLTSKFLGESEKLV 540
>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 37.5 bits (83), Expect = 0.002
Identities = 23/56 (41%), Positives = 32/56 (57%)
Frame = +2
Query: 266 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTEVLMENFRRA 433
R +L+ GPPGTGKT +A A+A E G F + G E+ S ++E N R+A
Sbjct: 259 RGILMYGPPGTGKTLMARAVANETGAF--FFLINGPEIMSKMAGESE---SNLRKA 309
Score = 34.7 bits (76), Expect = 0.012
Identities = 19/47 (40%), Positives = 26/47 (55%)
Frame = +2
Query: 266 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTE 406
+ +L GPPGTGKT +A AIA E F + G E+ S ++E
Sbjct: 532 KGVLFFGPPGTGKTLLAKAIANECSAN--FISVKGPELLSMWFGESE 576
>SPCC576.10c |rpt3||19S proteasome regulatory subunit
Rpt3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 389
Score = 36.7 bits (81), Expect = 0.003
Identities = 19/37 (51%), Positives = 23/37 (62%)
Frame = +2
Query: 266 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSE 376
R +LL GPPGTGKT + A+A T F +VGSE
Sbjct: 169 RGVLLYGPPGTGKTMLVKAVAN--STAANFIRVVGSE 203
>SPAC1834.11c |sec18||secretory pathway protein Sec18
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 792
Score = 36.7 bits (81), Expect = 0.003
Identities = 23/66 (34%), Positives = 36/66 (54%)
Frame = +2
Query: 266 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTEVLMENFRRAIGLR 445
+ +LL GPPGTGKT IA I + L + P + G E+ + + ++E EN R+
Sbjct: 305 KGILLYGPPGTGKTLIARQIGKMLNAREPKI-VNGPEILNKYVGQSE---ENVRKLFADA 360
Query: 446 IRETKE 463
RE ++
Sbjct: 361 EREYRD 366
Score = 36.3 bits (80), Expect = 0.004
Identities = 28/104 (26%), Positives = 54/104 (51%), Gaps = 6/104 (5%)
Frame = +2
Query: 83 IEEVKSTAKTQRISAHSHIK-GLGLDENGVPIQMAAGLVG-----QESAREAAGIVVDMI 244
+E +K + ++A S ++ G+ E + ++ G++ +E E V +
Sbjct: 520 LENIKVN-RNDFLNALSEVRPAYGVSEEELESRVQGGIINFGKHIEEIITEGKLFVQQVK 578
Query: 245 RSKKMAGRALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSE 376
S++ ++LL+GP +GKTA+A IA LG++ PF +V +E
Sbjct: 579 NSERTRLVSVLLSGPIASGKTALAATIA--LGSEFPFVKLVSAE 620
>SPBC947.01 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 35.9 bits (79), Expect = 0.005
Identities = 20/50 (40%), Positives = 29/50 (58%)
Frame = +2
Query: 266 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTEVLM 415
+ +LL GPPGTGKT +A A+A E K F + S + S + +E L+
Sbjct: 413 QGMLLFGPPGTGKTMLARAVATE--AKATFFSISASSLTSKYLGDSEKLV 460
>SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit
Rpt6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 403
Score = 35.5 bits (78), Expect = 0.007
Identities = 18/38 (47%), Positives = 24/38 (63%)
Frame = +2
Query: 266 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEV 379
+ +LL GPPGTGKT +A A+A T F + GSE+
Sbjct: 180 KGILLYGPPGTGKTLLARAVAHH--TDCKFIRVSGSEL 215
>SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit
Rpt2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 448
Score = 35.1 bits (77), Expect = 0.009
Identities = 17/38 (44%), Positives = 25/38 (65%)
Frame = +2
Query: 266 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEV 379
+ ++L G PGTGKT +A A+A + T F +VGSE+
Sbjct: 226 KGVILYGAPGTGKTLLAKAVANQ--TSATFLRVVGSEL 261
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 35.1 bits (77), Expect = 0.009
Identities = 28/102 (27%), Positives = 45/102 (44%), Gaps = 7/102 (6%)
Frame = +2
Query: 266 RALLLAGPPGTGKTAIALAIAQELGT---KVPFCPMVGSEVYSTEIKKTE----VLMENF 424
R +L GPPGTGKT +A +A T K+ F GS+ S + + E +L E
Sbjct: 407 RGVLFHGPPGTGKTLMARVLAANCSTKNQKISFFLRKGSDCLSKWVGEAERQLRLLFEEA 466
Query: 425 RRAIGLRIRETKEVYEGEVTELTPVETENPAGGYGKTVSHVI 550
RR + ++ E+ L P+ + + VS ++
Sbjct: 467 RRV------QPSIIFFDEIDGLAPIRSSKQEQTHSSIVSTLL 502
>SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 432
Score = 34.7 bits (76), Expect = 0.012
Identities = 19/48 (39%), Positives = 31/48 (64%)
Frame = +2
Query: 272 LLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTEVLM 415
+LL GPPGTGK+ +A A+A E G+ F + S++ S + ++E L+
Sbjct: 165 ILLYGPPGTGKSYLAKAVATEAGS--TFFSISSSDLVSKWMGESERLV 210
>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1067
Score = 33.9 bits (74), Expect = 0.022
Identities = 19/47 (40%), Positives = 25/47 (53%)
Frame = +2
Query: 257 MAGRALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIK 397
M G+ + L GPPG GKT++ +IA L + F VG EIK
Sbjct: 569 MQGKIMCLVGPPGVGKTSVGKSIASALNREF-FRFSVGGLTDVAEIK 614
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 33.1 bits (72), Expect = 0.038
Identities = 28/99 (28%), Positives = 45/99 (45%), Gaps = 4/99 (4%)
Frame = +2
Query: 266 RALLLAGPPGTGKTAIALAIAQELGT---KVPFCPMVGSEVYSTEIKKTE-VLMENFRRA 433
R +L GPPGTGKT +A A+A + KV F G++ S + + E L F A
Sbjct: 301 RGVLFHGPPGTGKTLMARALAAACSSENKKVSFYMRKGADCLSKWVGEAERQLRLLFEEA 360
Query: 434 IGLRIRETKEVYEGEVTELTPVETENPAGGYGKTVSHVI 550
+ + ++ E+ L PV + + VS ++
Sbjct: 361 ---KSTQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLL 396
>SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 449
Score = 31.9 bits (69), Expect = 0.087
Identities = 14/24 (58%), Positives = 17/24 (70%)
Frame = +2
Query: 266 RALLLAGPPGTGKTAIALAIAQEL 337
R LL GPPG+GKT+ A+A EL
Sbjct: 243 RGYLLYGPPGSGKTSFLYALAGEL 266
>SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 355
Score = 31.9 bits (69), Expect = 0.087
Identities = 13/23 (56%), Positives = 18/23 (78%)
Frame = +2
Query: 266 RALLLAGPPGTGKTAIALAIAQE 334
+ LLL GPPG GKT +A A+A++
Sbjct: 126 KGLLLYGPPGCGKTMLAKALAKQ 148
>SPAC14C4.13 |rad17||RFC related checkpoint protein
Rad17|Schizosaccharomyces pombe|chr 1|||Manual
Length = 606
Score = 31.9 bits (69), Expect = 0.087
Identities = 27/96 (28%), Positives = 44/96 (45%), Gaps = 1/96 (1%)
Frame = +2
Query: 158 ENGVPIQMAAGLVGQESAREAAGIVVDMIRSKKMAGRALLLAGPPGTGKTAIALAIAQEL 337
E +P Q AA L +S A + + + + R LL+ GP G GK+ +A+EL
Sbjct: 74 EKYIP-QKAADLAVHKSKISA---IKQWMLTDSLESRLLLICGPSGCGKSTAVQVLAKEL 129
Query: 338 G-TKVPFCPMVGSEVYSTEIKKTEVLMENFRRAIGL 442
G + + + + + S + T L E F R + L
Sbjct: 130 GYSLIEWLNPMNLKEPSNQESDTLSLTEKFSRFMSL 165
>SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr
2|||Manual
Length = 577
Score = 31.1 bits (67), Expect = 0.15
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Frame = +2
Query: 182 AAGLVGQESAREAAGIVVDMIRSK--KMAGRALLLAGPPGTGKTAI 313
+AG+VG+E+ + IV R AG AL ++G PGTGKT +
Sbjct: 166 SAGVVGRENEKS---IVESFFRQHLDANAGGALYVSGAPGTGKTVL 208
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 30.7 bits (66), Expect = 0.20
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +2
Query: 266 RALLLAGPPGTGKTAIALAIAQELG 340
+ +LL G PG GKT++ A+A+E G
Sbjct: 1560 KPILLEGSPGVGKTSLITALARETG 1584
Score = 29.5 bits (63), Expect = 0.46
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +2
Query: 266 RALLLAGPPGTGKTAIALAIAQELGTKV 349
R +LLAGP G GK + IA +LG ++
Sbjct: 153 RPILLAGPEGIGKKFLITQIAAKLGQQI 180
Score = 27.5 bits (58), Expect = 1.9
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +2
Query: 230 VVDMIRSKKMAGRALLLAGPPGTGKTAIALAIAQELGTKV 349
+++ + + LLL G GTGKT +A LG KV
Sbjct: 456 LLEQLAAGVQTNEPLLLVGETGTGKTTTIQLLAGLLGQKV 495
>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 934
Score = 30.3 bits (65), Expect = 0.27
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = +2
Query: 266 RALLLAGPPGTGKTAIALAIAQELGTKV 349
+A+LL+GPPG GKT A +A+ G V
Sbjct: 410 KAVLLSGPPGIGKTTAAHLVAKLEGYDV 437
>SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit
Rpt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 438
Score = 30.3 bits (65), Expect = 0.27
Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 6/74 (8%)
Frame = +2
Query: 131 SHIKGLGLDENGVPIQMAAGLVGQESAREAAGIVVDMIRSKKMAG------RALLLAGPP 292
S +K + +DE G + ++ IV+ M ++ K + L+ GPP
Sbjct: 169 SRVKAMEVDEKPTERYSDIGGLSKQIEELFEAIVLPMQQADKFRKLGVKPPKGCLMFGPP 228
Query: 293 GTGKTAIALAIAQE 334
GTGKT +A A A +
Sbjct: 229 GTGKTLLARACAAQ 242
>SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex
subunit Rfc3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 342
Score = 30.3 bits (65), Expect = 0.27
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +2
Query: 272 LLLAGPPGTGKTAIALAIAQEL 337
+L GPPGTGKT+ LA A+++
Sbjct: 59 MLFYGPPGTGKTSTILACARKI 80
>SPAC4G9.03 |adk1||adenylate kinase Adk1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 220
Score = 29.9 bits (64), Expect = 0.35
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +2
Query: 257 MAGRALLLAGPPGTGKTAIALAIAQELG 340
MAG L+L GPPG GK A I ++ G
Sbjct: 1 MAGMRLILVGPPGAGKGTQAPNIQKKYG 28
>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
Upf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 925
Score = 29.5 bits (63), Expect = 0.46
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +2
Query: 275 LLAGPPGTGKTAIALAIAQELGT 343
L+ GPPGTGKT + ++ L T
Sbjct: 411 LIQGPPGTGKTVTSASVVYHLAT 433
>SPAC23D3.02 |rfc2||DNA replication factor C complex subunit
Rfc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 340
Score = 29.5 bits (63), Expect = 0.46
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +2
Query: 272 LLLAGPPGTGKTAIALAIAQEL 337
+L G PGTGKT+ LA+++EL
Sbjct: 55 MLFYGSPGTGKTSTILALSREL 76
>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 937
Score = 29.5 bits (63), Expect = 0.46
Identities = 26/101 (25%), Positives = 48/101 (47%), Gaps = 1/101 (0%)
Frame = +2
Query: 272 LLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTEV-LMENFRRAIGLRI 448
+LL G PG GKT +A AI+ V F + G E+ I K+E + + F RA ++
Sbjct: 643 ILLFGYPGCGKTYLASAISSTF--PVQFISIKGPELLDKYIGKSEQGVRDLFSRA---QM 697
Query: 449 RETKEVYEGEVTELTPVETENPAGGYGKTVSHVIIGLKTAK 571
+ ++ E + P ++ G + V+ ++ + A+
Sbjct: 698 AKPCVLFFDEFDSVAPRRGQDSTGVTDRVVNQILTQMDGAE 738
>SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 803
Score = 29.1 bits (62), Expect = 0.61
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
Frame = +2
Query: 191 LVGQESAREAAGIVVDMIRSK-KMAGRAL---LLAGPPGTGKTAIALAIAQEL 337
++GQ+ A +A V + R+ + R L L GP G GKTA+ A+A+ L
Sbjct: 504 IIGQDEALKAIADAVRLSRAGLQNTNRPLASFLFLGPTGVGKTALTKALAEFL 556
>SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 660
Score = 28.7 bits (61), Expect = 0.81
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +2
Query: 275 LLAGPPGTGKTAIALAIAQEL 337
L+ GPPGTGKT + I Q+L
Sbjct: 229 LIHGPPGTGKTHTLVEIIQQL 249
>SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 286
Score = 28.3 bits (60), Expect = 1.1
Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 7/84 (8%)
Frame = +2
Query: 278 LAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTE----IKKTEVLMENFRRAI--- 436
+ GP G+GKTA+ L + + LG K +V +++++ E + + + L E RAI
Sbjct: 91 VGGPVGSGKTALLLQLCRLLGEKYSI-GVVTNDIFTREDQEFLIRNKALPEERIRAIETG 149
Query: 437 GLRIRETKEVYEGEVTELTPVETE 508
G +E G + L +++E
Sbjct: 150 GCPHAAIREDVSGNLVALEELQSE 173
>SPAC4G9.12 |||gluconokinase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 193
Score = 28.3 bits (60), Expect = 1.1
Identities = 10/22 (45%), Positives = 18/22 (81%)
Frame = +2
Query: 275 LLAGPPGTGKTAIALAIAQELG 340
++ GP G+GKT +A A++++LG
Sbjct: 18 VVIGPAGSGKTTMAKAVSEKLG 39
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 27.9 bits (59), Expect = 1.4
Identities = 12/28 (42%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Frame = +2
Query: 119 ISAHS-HIKGLGLDENGVPIQMAAGLVG 199
+S H+ IK LD+ G+PI++ +GL+G
Sbjct: 35 VSLHNLRIKPEALDKLGIPIEITSGLIG 62
>SPCC1322.09 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 455
Score = 27.1 bits (57), Expect = 2.5
Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +2
Query: 200 QESAREAAGIVVDMIRSKKMA-GRALLLAGPP 292
++S AAGIV M SK+MA G L AG P
Sbjct: 402 EQSISVAAGIVAQMYTSKRMALGDPSLFAGLP 433
>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
Sen1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1687
Score = 27.1 bits (57), Expect = 2.5
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +2
Query: 275 LLAGPPGTGKTAIALAIAQEL 337
L+ GPPGTGKT + I L
Sbjct: 1149 LIQGPPGTGKTKTIIGIISAL 1169
>SPAC630.09c |mug58||glycerate kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 277
Score = 27.1 bits (57), Expect = 2.5
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 7/47 (14%)
Frame = +2
Query: 227 IVVDMI-----RSKKMAGRALLL--AGPPGTGKTAIALAIAQELGTK 346
I+VD I + K GR +L +GP G+GK+ +A A+ EL K
Sbjct: 6 IIVDKILKFLEKQPKPEGRPFILGISGPQGSGKSTLASALDTELTRK 52
>SPCC830.11c |||adenylate kinase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 175
Score = 26.6 bits (56), Expect = 3.3
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +2
Query: 272 LLLAGPPGTGKTAIALAIAQ 331
+++ G PGTGKT +A +A+
Sbjct: 11 IIICGTPGTGKTTLAEQVAE 30
>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 905
Score = 26.6 bits (56), Expect = 3.3
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Frame = +2
Query: 275 LLAGPPGTGKTAIALAIAQE-LGTKVPFCPMVGSEVYSTEIKKTEVLMENFRRAIGLRIR 451
+L G PG GKT+IA +A+ + VP + ++ S ++ V FR RI+
Sbjct: 206 VLIGEPGVGKTSIAEGLARRIIDDDVP-ANLSNCKLLSLDVGSL-VAGSKFRGEFEERIK 263
Query: 452 ET-KEVYEGE 478
KEV E E
Sbjct: 264 SVLKEVEESE 273
Score = 25.4 bits (53), Expect = 7.6
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +2
Query: 269 ALLLAGPPGTGKTAIALAIA 328
+ L GP GTGKT + A+A
Sbjct: 616 SFLFCGPSGTGKTLLTKALA 635
>SPCC162.11c |||uridine kinase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 454
Score = 26.2 bits (55), Expect = 4.3
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +2
Query: 266 RALLLAGPPGTGKTAIALAIAQEL 337
R + +AGP G+GKT++A I + L
Sbjct: 22 RFIGIAGPSGSGKTSVAQLIVKAL 45
>SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated
heterochromatin assembly Hrr1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1015
Score = 26.2 bits (55), Expect = 4.3
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +2
Query: 266 RALLLAGPPGTGKTAIALAIAQEL 337
R ++ GPPGTGK+ + L + L
Sbjct: 387 RLSIIQGPPGTGKSFVTLKAIETL 410
>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1944
Score = 25.8 bits (54), Expect = 5.7
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +2
Query: 275 LLAGPPGTGKTAIALAI 325
L+ GPPGTGKT L +
Sbjct: 1290 LIQGPPGTGKTKTILGM 1306
>SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subunit
Orc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 707
Score = 25.8 bits (54), Expect = 5.7
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +2
Query: 263 GRALLLAGPPGTGKTA 310
G L ++G PGTGKTA
Sbjct: 361 GACLYISGTPGTGKTA 376
>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1065
Score = 25.8 bits (54), Expect = 5.7
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +2
Query: 275 LLAGPPGTGKTAIALAIAQELG 340
L+ GP GTGK+ I AI LG
Sbjct: 37 LIIGPNGTGKSTIVSAICIGLG 58
>SPCC417.08 |tef3||translation elongation factor
eEF3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1047
Score = 25.8 bits (54), Expect = 5.7
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +2
Query: 221 AGIVVDMIRSKKMAGRALLLAGPPGTGKTAIALAI 325
A I+++ R + GR L GP G+GK+ + AI
Sbjct: 446 AKILLNRTRLRLKRGRRYGLCGPNGSGKSTLMRAI 480
>SPAC27F1.07 |||dolichyl-diphospho-oligosaccharide-protein
glycosyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 450
Score = 25.8 bits (54), Expect = 5.7
Identities = 24/94 (25%), Positives = 43/94 (45%), Gaps = 11/94 (11%)
Frame = +2
Query: 422 FRRAIGLRIRETKEVYEGEVTELTPV-ETENPAGGY--------GKTVSHVIIGLKTA-- 568
+R + +R + + Y +T L V E + P Y G++V + + +K
Sbjct: 22 WRNSNAIRTIDLRSTYTKTLTSLIIVNEGDEPQNTYRYFQQTSPGESVLSLSVSIKEEEK 81
Query: 569 KGTKQLKLDPTIYESLQKEKVKLGMSFTLKLILG 670
KGT +K++ +Y+ + VK G S TL + G
Sbjct: 82 KGTNPIKVNNNVYDIPLQPPVKPGESRTLLIQAG 115
>SPBC17D1.03c |||exosome subunit Rrp43 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 270
Score = 25.4 bits (53), Expect = 7.6
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +2
Query: 557 LKTAKGTKQLKLDPTIYESLQKEK 628
+KT G KQL P+I++ + E+
Sbjct: 1 MKTVSGVKQLSFTPSIFKKITPEQ 24
>SPAPB24D3.08c |||NADP-dependent oxidoreductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 349
Score = 25.4 bits (53), Expect = 7.6
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +1
Query: 622 GKGEVGDVIYIEANSGAV 675
GK + G+ IYI A SGAV
Sbjct: 156 GKPKAGETIYISAASGAV 173
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 25.4 bits (53), Expect = 7.6
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +2
Query: 284 GPPGTGKTAIALAIAQELGTKV 349
GP GTGKT A++ LG V
Sbjct: 1890 GPAGTGKTETVKAVSAYLGKNV 1911
>SPBC1861.09 |ppk22||serine/threonine protein kinase Ppk22
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 526
Score = 25.0 bits (52), Expect = 10.0
Identities = 10/38 (26%), Positives = 21/38 (55%)
Frame = -2
Query: 557 VL*SHEILFFHSLQQDFLFQQVLTQLLHPHILLWFHVY 444
+L E++ H + + Q++LT+ HP I+ +H +
Sbjct: 185 ILNKREMIKRHKVNRVLAEQEILTKSKHPFIVTLYHSF 222
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,818,840
Number of Sequences: 5004
Number of extensions: 59712
Number of successful extensions: 238
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 237
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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