Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30618
         (700 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    25   0.69 
DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.              25   0.91 
DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein ...    22   6.4  
DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex det...    22   6.4  
DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex det...    22   6.4  
DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex det...    22   6.4  
DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex det...    22   6.4  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    22   6.4  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    22   6.4  
AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein ...    22   6.4  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    21   8.5  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 25.0 bits (52), Expect = 0.69
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -2

Query: 126  QDEPWMENFSVDPQLIKDY 70
            ++ PW+E   V P+LI +Y
Sbjct: 995  KEPPWLEGVHVTPELIYEY 1013


>DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.
          Length = 132

 Score = 24.6 bits (51), Expect = 0.91
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +2

Query: 626 NGCKTISESSQCKRA 670
           N CK I+ES+ CK++
Sbjct: 101 NNCKDITESNSCKKS 115


>DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein 6
           protein.
          Length = 125

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -1

Query: 331 ILPIKLKHCCEIKNGRQKYTATRKYLNFV 245
           ILP  L   C   N +QK+TA  K +N++
Sbjct: 63  ILPDALSTGCNKCNEKQKHTA-NKVVNYL 90


>DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex
          determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -2

Query: 54 YQPKDREYPDLCQLPE 7
          Y+ KDR+Y  LC   E
Sbjct: 12 YRKKDRQYEKLCNEEE 27


>DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex
          determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -2

Query: 54 YQPKDREYPDLCQLPE 7
          Y+ KDR+Y  LC   E
Sbjct: 12 YRKKDRQYEKLCNEEE 27


>DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex
          determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -2

Query: 54 YQPKDREYPDLCQLPE 7
          Y+ KDR+Y  LC   E
Sbjct: 12 YRKKDRQYEKLCNEEE 27


>DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex
          determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -2

Query: 54 YQPKDREYPDLCQLPE 7
          Y+ KDR+Y  LC   E
Sbjct: 12 YRKKDRQYEKLCNEEE 27


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +3

Query: 444 TLILLQYT*LIRYSIARERFATRK*NIICYML 539
           T++LL  T L   S + ER      N+IC++L
Sbjct: 265 TMMLLTLTVLWLDSRSTERMIAASVNLICHIL 296


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 6/23 (26%), Positives = 13/23 (56%)
 Frame = +1

Query: 85  LRIHRKILHPWLVLYFFAEIESE 153
           + ++  ++  W + YFF  + SE
Sbjct: 73  MNVYYIVILAWAIFYFFMSMRSE 95


>AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein
           protein.
          Length = 125

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -1

Query: 331 ILPIKLKHCCEIKNGRQKYTATRKYLNFV 245
           ILP  L   C   N +QK+TA  K +N++
Sbjct: 63  ILPDALSTGCNKCNEKQKHTA-NKVVNYL 90


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = -2

Query: 324 QSN*NIAVRSKMDAKNIPPLANI 256
           +S+ N+  ++K+D   IPP+  I
Sbjct: 401 ESSSNLQEKTKIDLLEIPPIRKI 423


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,117
Number of Sequences: 438
Number of extensions: 4167
Number of successful extensions: 13
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)