Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30615
(603 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c... 29 0.69
SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase Ubp10|Schizosa... 27 1.6
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 27 2.1
SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces p... 27 2.8
SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit S... 26 3.7
SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyce... 26 4.9
SPBC3B9.04 |||mitochondrial methyltransferase |Schizosaccharomyc... 25 6.4
SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8 |... 25 6.4
SPAC3A11.05c |kms1||meiotic spindle pole body protein Kms1|Schiz... 25 8.5
SPAC4A8.07c |||sphingoid long chain base |Schizosaccharomyces po... 25 8.5
>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1687
Score = 28.7 bits (61), Expect = 0.69
Identities = 18/46 (39%), Positives = 24/46 (52%)
Frame = +3
Query: 393 MVATNAAHSSGLMDSQTAKSLALGRSSILMDIYEELFSFSTIGIRS 530
+ +T S G+ + L R SI D YEE +SFSTI I+S
Sbjct: 1609 LTSTTRTPSLGIYTTDAQLRNFLNRISI--DAYEESYSFSTIDIQS 1652
>SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase
Ubp10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 502
Score = 27.5 bits (58), Expect = 1.6
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +2
Query: 383 TKRHGCHQRCTLLRFNGLPDSQEFSLRSLFDLDGYLRRTF 502
T+ H C+ L+F LP+S + +L D+ +R TF
Sbjct: 111 TENHHVFVNCSTLKFYVLPESYQVESSALQDIAYVMRPTF 150
>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 230
Score = 27.1 bits (57), Expect = 2.1
Identities = 17/63 (26%), Positives = 30/63 (47%)
Frame = -2
Query: 299 LFTCFLDIFFYVI*LKNFSYVKINYKFSSNCGLLFIKSF*LFYQYLLTIFYALHYLLANY 120
LF C L FF+++ +FS+ F S +++ SF + + +L F + L+
Sbjct: 112 LFRCLLLFFFFLLFFLSFSFSFSFLFFLSQIFIVYFSSFPILH-FLFFFFLCVCVFLSFL 170
Query: 119 FKL 111
F L
Sbjct: 171 FSL 173
>SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 467
Score = 26.6 bits (56), Expect = 2.8
Identities = 8/14 (57%), Positives = 12/14 (85%)
Frame = -1
Query: 300 TFYLFFRYFFLCNI 259
T+YLF+ FF+CN+
Sbjct: 450 TWYLFYALFFICNV 463
>SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit Sfc9
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 673
Score = 26.2 bits (55), Expect = 3.7
Identities = 9/26 (34%), Positives = 18/26 (69%)
Frame = +2
Query: 503 FIFHHRDSICDKSGLLDGHSIVEMLF 580
F+ H+ S+C SG+L GH+ ++ ++
Sbjct: 295 FLNHNLLSLCSPSGVLFGHNDIDTIY 320
>SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1297
Score = 25.8 bits (54), Expect = 4.9
Identities = 17/64 (26%), Positives = 26/64 (40%)
Frame = +2
Query: 377 FNTKRHGCHQRCTLLRFNGLPDSQEFSLRSLFDLDGYLRRTFFIFHHRDSICDKSGLLDG 556
+ T +H + +L F FSL F D LR ++ + H I + +G
Sbjct: 345 YRTSKHEFYDYNIILFFQNSAREYMFSLTDFFYSDFELRVSYDFYGHDYPIKSLTRTSNG 404
Query: 557 HSIV 568
H IV
Sbjct: 405 HGIV 408
>SPBC3B9.04 |||mitochondrial methyltransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 248
Score = 25.4 bits (53), Expect = 6.4
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = -1
Query: 528 IESLWWKMKKVLRKYPSRSKSDL 460
I ++ W+++K + Y SR KSDL
Sbjct: 20 IGAVAWRLRKDVLNYESRQKSDL 42
>SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 777
Score = 25.4 bits (53), Expect = 6.4
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -1
Query: 486 YPSRSKSDLRLNSWLSGSPLN 424
YP+ + ++R N WL SPL+
Sbjct: 482 YPTLASDEVRQNIWLVNSPLS 502
>SPAC3A11.05c |kms1||meiotic spindle pole body protein
Kms1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 607
Score = 25.0 bits (52), Expect = 8.5
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = -1
Query: 306 TNTFYLFFRYF-FLCNIIKEFQLC*NKL*IFLKLWFTFY*KFLIIL 172
+N LF+ F F C ++ LC L FL++ FTF +I+L
Sbjct: 552 SNILRLFYVLFLFACFYGLDYILCAELLQAFLRVVFTFCEHIIILL 597
>SPAC4A8.07c |||sphingoid long chain base |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 458
Score = 25.0 bits (52), Expect = 8.5
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = -2
Query: 245 SYVKINYKFSSNCGLLFIKSF*LFYQYLLTIFY 147
SYV + K ++ C + F+++ F +YLL + Y
Sbjct: 67 SYVSRSSKVATKCWVDFVENSDQFCEYLLDVAY 99
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,164,547
Number of Sequences: 5004
Number of extensions: 39528
Number of successful extensions: 100
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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