Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30615
         (603 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0296 - 2303344-2303395,2303732-2304180,2304287-2304355,230...    29   2.8  
12_02_0801 + 23308993-23309091,23309503-23309604,23310212-233103...    29   3.7  
07_03_0792 - 21541301-21542143,21542426-21542661,21543177-215433...    29   3.7  
04_04_1069 - 30554565-30555021,30556833-30557026,30557182-30557496     28   5.0  
02_05_1185 + 34812851-34813144,34813336-34813457,34814136-34814718     28   6.5  
06_03_0974 - 26459747-26460190,26460278-26460946                       27   8.7  

>05_01_0296 -
           2303344-2303395,2303732-2304180,2304287-2304355,
           2304539-2306546,2311181-2311425
          Length = 940

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 12/32 (37%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
 Frame = -1

Query: 576 SISTIEXPSNSPDLSQI-ESLWWKMKKVLRKY 484
           +++T+E PS+S +L+ + + LW K  KVL  +
Sbjct: 759 AVATLEDPSSSENLNHVKDDLWIKQGKVLESF 790


>12_02_0801 +
           23308993-23309091,23309503-23309604,23310212-23310388,
           23310473-23310715,23310896-23310947,23310998-23311145,
           23311240-23311321,23311462-23311557,23311641-23311742,
           23312048-23312164,23312329-23312400
          Length = 429

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -3

Query: 460 KAKLLAVWESIKPEECAALVATMPLRIKAVI 368
           K   L   +++ P+ CA L+AT+PL ++  I
Sbjct: 182 KTVFLPTEKAMTPDACAPLIATLPLEVRTKI 212


>07_03_0792 -
           21541301-21542143,21542426-21542661,21543177-21543373,
           21543459-21544173,21544250-21544892,21545970-21546139,
           21546442-21546943
          Length = 1101

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = -1

Query: 591 WLLAKSISTIEXPSNSPDLSQIESLW-WKMKKVLRKYPSRSKSDLR 457
           WL+  S S +E  S+   +S  E+LW W+ +++ R Y  R +   R
Sbjct: 43  WLVNNSNSILEFSSSHSRVSD-ETLWQWRWRQITRPYSWRCRRGFR 87


>04_04_1069 - 30554565-30555021,30556833-30557026,30557182-30557496
          Length = 321

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -3

Query: 61  PATYGQLKQSKSTASSCDC 5
           P T GQL  S S+ S+CDC
Sbjct: 249 PCTSGQLPNSTSSPSTCDC 267


>02_05_1185 + 34812851-34813144,34813336-34813457,34814136-34814718
          Length = 332

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 15/40 (37%), Positives = 18/40 (45%)
 Frame = +2

Query: 326 KIVRLPLSCVAFALNDSFNTKRHGCHQRCTLLRFNGLPDS 445
           +I RLP  CVA+A+  S  T    CH       F    DS
Sbjct: 10  EIYRLPEECVAYAI--SMTTPGDACHSSAVSPAFRAAADS 47


>06_03_0974 - 26459747-26460190,26460278-26460946
          Length = 370

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
 Frame = +2

Query: 356 AFALNDSFNTKRHGCHQRCTLLRFNGLPDSQEFSLRSLF-DLDGYLRRTFFIFHHRDSI 529
           A A+ D    + H   QR      N   ++++  L  LF DLD YL   F  F H DS+
Sbjct: 124 AEAVEDKAAAEHHHHQQRQQHGALNLNVEAKDMKLDYLFSDLDPYLNVEFARFPHADSV 182


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,399,933
Number of Sequences: 37544
Number of extensions: 231816
Number of successful extensions: 513
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 502
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 513
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)