Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30614
         (785 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B3.08 |||COP9 signalosome complex subunit 12 |Schizosacchar...    34   0.020
SPBC29A3.08 |pof4||elongin-A, F-box protein Pof4|Schizosaccharom...    29   1.00 
SPCC584.11c |||Svf1 family protein Svf1|Schizosaccharomyces pomb...    26   7.0  
SPBC16A3.07c |nrm1||negative regulator of MBF|Schizosaccharomyce...    26   7.0  
SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni...    25   9.3  
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces...    25   9.3  
SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|...    25   9.3  
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    25   9.3  

>SPAC1B3.08 |||COP9 signalosome complex subunit 12
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 423

 Score = 34.3 bits (75), Expect = 0.020
 Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
 Frame = -2

Query: 640 PVTKKLRRTRLGWYGHVMRRNDNELGKRALTMNMEGFRG---RGRPKKKWMDCVK 485
           P+T+ L+   LG +G  +++N+  L K  + + +EG R    R   +K W+ C K
Sbjct: 306 PLTRALKSGNLGEFGKCLQKNETLLAKTKIYLTLEGTRDLCIRNLFRKTWIICGK 360


>SPBC29A3.08 |pof4||elongin-A, F-box protein
           Pof4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 199

 Score = 28.7 bits (61), Expect = 1.00
 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -2

Query: 604 WYGHVMRRNDNELGKRALTMNMEGFRG-RGRPKKK 503
           W  HV+R    EL KR +  N++ +RG  G+ KKK
Sbjct: 60  WKDHVLRDFGLELQKRTILNNIDDWRGLYGKLKKK 94


>SPCC584.11c |||Svf1 family protein Svf1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 380

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = -2

Query: 370 EDDVKSYTYFVNTSIGDWTTTNKFHHKIFN 281
           E D   +   +++++G WTTT +   +IF+
Sbjct: 67  EGDYMCFVQLIHSNLGSWTTTAQSTCRIFD 96


>SPBC16A3.07c |nrm1||negative regulator of MBF|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 342

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +3

Query: 435 PLSYTISSLTPLLHISPFTQSIHFFLGLPLPLKPS 539
           P S + S+ TPL H+S    + +++ G P P+  S
Sbjct: 278 PKSLSKSNSTPLKHLSAQKPNSNYYTGPPTPVSIS 312


>SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit
           Ctf18|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 960

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 11/49 (22%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
 Frame = +2

Query: 608 QTRTSQLLCHRCHFQI----SSDIFIPYSIHSRYSTQLSQHSHLCCMPS 742
           +T  + ++ H+  +++    +SD    +++H + S+ +S HS L   P+
Sbjct: 429 KTTLAHVIAHQAGYKVLEINASDDRTAHTVHEKVSSAISNHSALSSQPT 477


>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1526

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = +1

Query: 370 HNFPALLPVTWGRCNMLSPSILLYHTPFPRSLPFYTYRL 486
           H F   L +   RCN +   I +    FP  LPF  +R+
Sbjct: 661 HTFNRPLVLGQLRCNGVLEGIRITRAGFPNRLPFNDFRV 699


>SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 612

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +3

Query: 579 FRLITCPYHPKRVRLNFFVTGVTFRF 656
           F+L + P +P  +  N+FV G T  F
Sbjct: 370 FKLPSDPTYPSDIETNYFVKGETITF 395


>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2104

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = +1

Query: 367 PHNFPALLPVTWGRCNMLSPSILLYHTPFPRSLPFYTYR 483
           PHN    L +   RCN +   I +  T FP  L +  +R
Sbjct: 672 PHNLDKSLVLHQLRCNGVLEGIRIAQTGFPNKLFYTEFR 710


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,326,075
Number of Sequences: 5004
Number of extensions: 71077
Number of successful extensions: 209
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 209
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)