Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30614
(785 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0044 + 340486-340854,341855-341911,343100-343974,344065-34... 29 4.2
01_03_0166 - 13372878-13373031,13373487-13373528,13373590-133736... 29 5.5
10_07_0160 - 13656172-13656476,13656799-13657528 28 7.3
07_03_1321 - 25794146-25794904 28 9.7
02_02_0011 + 6083431-6085541,6086659-6086779,6087188-6087247,608... 28 9.7
01_06_1473 - 37619415-37619561,37619649-37619723,37619800-376199... 28 9.7
01_06_0279 + 28119902-28120058,28120602-28120960,28121314-281213... 28 9.7
>11_01_0044 +
340486-340854,341855-341911,343100-343974,344065-344398,
345553-345645,345913-346062
Length = 625
Score = 29.1 bits (62), Expect = 4.2
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
Frame = +3
Query: 477 ISPFTQSIHFFLGLPLPLKPSIFIVKA-LLPSSLSFRLITCPYHPKRVRLNF----FVTG 641
+SPF+ S++ L +PL S+ + A LL L P H KR+ L F+TG
Sbjct: 199 LSPFSPSVYLLLNAIVPLVVSLVALPAILLCHPHDGHLHVVPKHDKRIFLGLYLLAFITG 258
Query: 642 V 644
+
Sbjct: 259 I 259
>01_03_0166 -
13372878-13373031,13373487-13373528,13373590-13373669,
13374513-13374593,13375032-13375115
Length = 146
Score = 28.7 bits (61), Expect = 5.5
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = +1
Query: 343 NMYMISHHPHNFPALLPVTWGRCNMLSPSILLYHTPFPRSLPF 471
+M MIS+ N +L+P+ L P++ + HTP P +P+
Sbjct: 52 DMLMISN---NVTSLMPIGQDGLMSLGPALAMTHTPIPMIIPW 91
>10_07_0160 - 13656172-13656476,13656799-13657528
Length = 344
Score = 28.3 bits (60), Expect = 7.3
Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Frame = +3
Query: 477 ISPFTQSIHFFLGLPLPLKPSIF-IVKALLPSSLSFRLITCPYHPKRVRLNFFVTGVTFR 653
+SP S+ L PL + PSI + L P+S F+ ++ F+ G TF
Sbjct: 59 LSPLPASVSSSLSSPLSISPSICRSARLLCPNSTYFQSLSS---------TVFIDGCTFS 109
Query: 654 FPLTYSFRILFILVTP 701
+ T+++ I + P
Sbjct: 110 YSCTFTYEHTNITIKP 125
>07_03_1321 - 25794146-25794904
Length = 252
Score = 27.9 bits (59), Expect = 9.7
Identities = 17/31 (54%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = +2
Query: 449 HFLAHSPFTH-IAFHAIHPFFLRSTSSSKAF 538
H L SP T AF HP FLRS SSS F
Sbjct: 15 HSLPSSPATSPTAFLDDHPSFLRSPSSSPTF 45
>02_02_0011 + 6083431-6085541,6086659-6086779,6087188-6087247,
6087354-6088391,6089733-6089925,6090326-6090375,
6090470-6090744,6091114-6091180,6091189-6091278,
6091301-6091381,6091435-6091593
Length = 1414
Score = 27.9 bits (59), Expect = 9.7
Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Frame = -2
Query: 610 LGWYGHVMRRNDNELGKRALTMNMEGFRGRGRPKKKWMDCV-KGDMCKRGVSEEMVYDRG 434
LG GH R+ D + G +RG G ++ + V + K+ S + RG
Sbjct: 1169 LGISGHAERKPDKQNGGDKNGAPQGPWRGGGYKSEEEITAVYMKEKMKKIASAKKKSGRG 1228
Query: 433 VWKEKACC 410
W KACC
Sbjct: 1229 GWGCKACC 1236
>01_06_1473 -
37619415-37619561,37619649-37619723,37619800-37619919,
37620074-37620127,37620204-37620426,37620506-37620585,
37620675-37620764,37620847-37620960,37621192-37621272,
37621383-37621490,37621677-37621722,37621802-37621899,
37621975-37622148,37622456-37622548,37623229-37623285,
37623399-37623438,37623567-37623685,37624179-37624298,
37624723-37624815,37624940-37625251,37625325-37625444,
37625545-37625658,37625731-37625910,37625996-37626110,
37626195-37626358,37626584-37626769,37626888-37626978,
37627089-37627153,37627223-37627297,37627410-37627493,
37627575-37627742,37628160-37629293
Length = 1579
Score = 27.9 bits (59), Expect = 9.7
Identities = 18/59 (30%), Positives = 29/59 (49%)
Frame = +3
Query: 117 SWSQMTKVFFFDS*HIFKCCKSSIHYVDEAQPKDISFIVTSCSINQRPLLYCDVGLKIL 293
SW ++K + CK + VD PKDIS ++TS ++ P++ V LK +
Sbjct: 524 SWLSISKFLACPATQRVSWCKFEVT-VDS--PKDISVLMTSTTLEVPPVVVAAVNLKTI 579
>01_06_0279 +
28119902-28120058,28120602-28120960,28121314-28121393,
28121476-28121527,28121621-28121662,28121750-28121828,
28121991-28122022,28122102-28122170,28122412-28122528,
28122617-28122667,28123175-28123318
Length = 393
Score = 27.9 bits (59), Expect = 9.7
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = +3
Query: 564 PSSLSFRLITCPYHPKRVRLNFFVTGVT 647
PSS L PYHPK +F VT T
Sbjct: 21 PSSAPLLLRAKPYHPKAAACSFTVTATT 48
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,529,051
Number of Sequences: 37544
Number of extensions: 421758
Number of successful extensions: 997
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 964
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 996
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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