Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30614
(785 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC087842-1|AAH87842.1| 416|Homo sapiens solute carrier family 3... 32 2.7
AL365223-2|CAI15712.2| 416|Homo sapiens solute carrier family 3... 32 2.7
Y09615-1|CAA70830.1| 399|Homo sapiens mTERF protein. 31 6.2
BC130391-1|AAI30392.1| 399|Homo sapiens mitochondrial transcrip... 31 6.2
BC130389-1|AAI30390.1| 399|Homo sapiens mitochondrial transcrip... 31 6.2
BC108648-1|AAI08649.1| 399|Homo sapiens mitochondrial transcrip... 31 6.2
BC000965-1|AAH00965.1| 399|Homo sapiens mitochondrial transcrip... 31 6.2
AK222730-1|BAD96450.1| 399|Homo sapiens mitochondrial transcrip... 31 6.2
AC003086-1|AAB83941.1| 399|Homo sapiens mitochondrial transcrip... 31 6.2
>BC087842-1|AAH87842.1| 416|Homo sapiens solute carrier family 35,
member D3 protein.
Length = 416
Score = 31.9 bits (69), Expect = 2.7
Identities = 27/74 (36%), Positives = 36/74 (48%), Gaps = 7/74 (9%)
Frame = +3
Query: 429 HTPLS--YTIS-SLTPLLHISPF--TQSIHF--FLGLPLPLKPSIFIVKALLPSSLSFRL 587
H PL+ Y I+ S TPLL I F T SIH F G P IF+ L+ +++F
Sbjct: 184 HGPLTAQYVIAVSATPLLVICSFASTDSIHAWTFPGWKDPAMVCIFVACILIGCAMNFTT 243
Query: 588 ITCPYHPKRVRLNF 629
+ C Y V +F
Sbjct: 244 LHCTYINSAVTTSF 257
>AL365223-2|CAI15712.2| 416|Homo sapiens solute carrier family 35,
member D3 protein.
Length = 416
Score = 31.9 bits (69), Expect = 2.7
Identities = 27/74 (36%), Positives = 36/74 (48%), Gaps = 7/74 (9%)
Frame = +3
Query: 429 HTPLS--YTIS-SLTPLLHISPF--TQSIHF--FLGLPLPLKPSIFIVKALLPSSLSFRL 587
H PL+ Y I+ S TPLL I F T SIH F G P IF+ L+ +++F
Sbjct: 184 HGPLTAQYVIAVSATPLLVICSFASTDSIHAWTFPGWKDPAMVCIFVACILIGCAMNFTT 243
Query: 588 ITCPYHPKRVRLNF 629
+ C Y V +F
Sbjct: 244 LHCTYINSAVTTSF 257
>Y09615-1|CAA70830.1| 399|Homo sapiens mTERF protein.
Length = 399
Score = 30.7 bits (66), Expect = 6.2
Identities = 19/71 (26%), Positives = 30/71 (42%)
Frame = -2
Query: 778 SACWTTKVADETRWHAAEMRMLR*LCGVTRMNRIRNEYVRGNLKVTPVTKKLRRTRLGWY 599
S CW T+ + E + + R+ C T ++NE + NL V + R R
Sbjct: 37 SRCWMTRFSAENIFKSVSFRLFGVKCHNTDSEPLKNEDLLKNLLTMGVDIDMARKRQPGV 96
Query: 598 GHVMRRNDNEL 566
H M N+ +L
Sbjct: 97 FHRMITNEQDL 107
>BC130391-1|AAI30392.1| 399|Homo sapiens mitochondrial
transcription termination factor protein.
Length = 399
Score = 30.7 bits (66), Expect = 6.2
Identities = 19/71 (26%), Positives = 30/71 (42%)
Frame = -2
Query: 778 SACWTTKVADETRWHAAEMRMLR*LCGVTRMNRIRNEYVRGNLKVTPVTKKLRRTRLGWY 599
S CW T+ + E + + R+ C T ++NE + NL V + R R
Sbjct: 37 SRCWMTRFSAENIFKSVSFRLFGVKCHNTDSEPLKNEDLLKNLLTMGVDIDMARKRQPGV 96
Query: 598 GHVMRRNDNEL 566
H M N+ +L
Sbjct: 97 FHRMITNEQDL 107
>BC130389-1|AAI30390.1| 399|Homo sapiens mitochondrial
transcription termination factor protein.
Length = 399
Score = 30.7 bits (66), Expect = 6.2
Identities = 19/71 (26%), Positives = 30/71 (42%)
Frame = -2
Query: 778 SACWTTKVADETRWHAAEMRMLR*LCGVTRMNRIRNEYVRGNLKVTPVTKKLRRTRLGWY 599
S CW T+ + E + + R+ C T ++NE + NL V + R R
Sbjct: 37 SRCWMTRFSAENIFKSVSFRLFGVKCHNTDSEPLKNEDLLKNLLTMGVDIDMARKRQPGV 96
Query: 598 GHVMRRNDNEL 566
H M N+ +L
Sbjct: 97 FHRMITNEQDL 107
>BC108648-1|AAI08649.1| 399|Homo sapiens mitochondrial
transcription termination factor protein.
Length = 399
Score = 30.7 bits (66), Expect = 6.2
Identities = 19/71 (26%), Positives = 30/71 (42%)
Frame = -2
Query: 778 SACWTTKVADETRWHAAEMRMLR*LCGVTRMNRIRNEYVRGNLKVTPVTKKLRRTRLGWY 599
S CW T+ + E + + R+ C T ++NE + NL V + R R
Sbjct: 37 SRCWMTRFSAENIFKSVSFRLFGVKCHNTDSEPLKNEDLLKNLLTMGVDIDMARKRQPGV 96
Query: 598 GHVMRRNDNEL 566
H M N+ +L
Sbjct: 97 FHRMITNEQDL 107
>BC000965-1|AAH00965.1| 399|Homo sapiens mitochondrial
transcription termination factor, precursor protein.
Length = 399
Score = 30.7 bits (66), Expect = 6.2
Identities = 19/71 (26%), Positives = 30/71 (42%)
Frame = -2
Query: 778 SACWTTKVADETRWHAAEMRMLR*LCGVTRMNRIRNEYVRGNLKVTPVTKKLRRTRLGWY 599
S CW T+ + E + + R+ C T ++NE + NL V + R R
Sbjct: 37 SRCWMTRFSAENIFKSVSFRLFGVKCHNTDSEPLKNEDLLKNLLTMGVDIDMARKRQPGV 96
Query: 598 GHVMRRNDNEL 566
H M N+ +L
Sbjct: 97 FHRMITNEQDL 107
>AK222730-1|BAD96450.1| 399|Homo sapiens mitochondrial
transcription termination factor precursor variant
protein.
Length = 399
Score = 30.7 bits (66), Expect = 6.2
Identities = 19/71 (26%), Positives = 30/71 (42%)
Frame = -2
Query: 778 SACWTTKVADETRWHAAEMRMLR*LCGVTRMNRIRNEYVRGNLKVTPVTKKLRRTRLGWY 599
S CW T+ + E + + R+ C T ++NE + NL V + R R
Sbjct: 37 SRCWMTRFSAENIFKSVSFRLFGVKCHNTDSEPLKNEDLLKNLLTMGVDIDMARKRQPGV 96
Query: 598 GHVMRRNDNEL 566
H M N+ +L
Sbjct: 97 FHRMITNEQDL 107
>AC003086-1|AAB83941.1| 399|Homo sapiens mitochondrial
transcription terminator factor protein.
Length = 399
Score = 30.7 bits (66), Expect = 6.2
Identities = 19/71 (26%), Positives = 30/71 (42%)
Frame = -2
Query: 778 SACWTTKVADETRWHAAEMRMLR*LCGVTRMNRIRNEYVRGNLKVTPVTKKLRRTRLGWY 599
S CW T+ + E + + R+ C T ++NE + NL V + R R
Sbjct: 37 SRCWMTRFSAENIFKSVSFRLFGVKCHNTDSEPLKNEDLLKNLLTMGVDIDMARKRQPGV 96
Query: 598 GHVMRRNDNEL 566
H M N+ +L
Sbjct: 97 FHRMITNEQDL 107
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,731,891
Number of Sequences: 237096
Number of extensions: 2489378
Number of successful extensions: 12103
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11953
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12103
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9590293096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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