Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30614
         (785 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical pr...    45   5e-05
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans...    45   5e-05
AF025462-7|AAB71003.1|  805|Caenorhabditis elegans Hypothetical ...    45   5e-05
AC087794-3|AAG53700.1|  417|Caenorhabditis elegans Hypothetical ...    45   5e-05
AC103567-9|AAL35735.1|  204|Caenorhabditis elegans Hypothetical ...    43   3e-04
Z66523-2|CAA91410.1|  451|Caenorhabditis elegans Hypothetical pr...    29   2.9  

>U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical protein
            F20B4.7 protein.
          Length = 891

 Score = 45.2 bits (102), Expect = 5e-05
 Identities = 29/118 (24%), Positives = 50/118 (42%), Gaps = 5/118 (4%)
 Frame = -2

Query: 784  YVSACWTTKVADETRWHAAEMRMLR*LCGVTRMNRIRNEYVRGNLKVTPVTKK----LRR 617
            Y S  WT   A   R       + R L G+T   +   +  R +++   + +     +++
Sbjct: 750  YGSEAWTFTKALSERVRITHASLERRLVGITLTQQRERDLHREDIRTMSLVRDPLNFVKK 809

Query: 616  TRLGWYGHVMRRNDNELGKRALTMNMEGF-RGRGRPKKKWMDCVKGDMCKRGVSEEMV 446
             +LGW GHV RR D             G+ R  GRP  +W D ++ ++  R    E++
Sbjct: 810  RKLGWAGHVARRKDGRWTTLMTEWRPYGWKRPVGRPPMRWTDSLRKEITTRDADGEVI 867


>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
            transcriptase protein.
          Length = 1066

 Score = 45.2 bits (102), Expect = 5e-05
 Identities = 29/118 (24%), Positives = 50/118 (42%), Gaps = 5/118 (4%)
 Frame = -2

Query: 784  YVSACWTTKVADETRWHAAEMRMLR*LCGVTRMNRIRNEYVRGNLKVTPVTKK----LRR 617
            Y S  WT   A   R       + R L G+T   +   +  R +++   + +     +++
Sbjct: 925  YGSEAWTFTKALSERVRITHASLERRLVGITLTQQRERDLHREDIRTMSLVRDPLNFVKK 984

Query: 616  TRLGWYGHVMRRNDNELGKRALTMNMEGF-RGRGRPKKKWMDCVKGDMCKRGVSEEMV 446
             +LGW GHV RR D             G+ R  GRP  +W D ++ ++  R    E++
Sbjct: 985  RKLGWAGHVARRKDGRWTTLMTEWRPYGWKRPVGRPPMRWTDSLRKEITTRDADGEVI 1042


>AF025462-7|AAB71003.1|  805|Caenorhabditis elegans Hypothetical
            protein K10F12.5 protein.
          Length = 805

 Score = 45.2 bits (102), Expect = 5e-05
 Identities = 29/118 (24%), Positives = 50/118 (42%), Gaps = 5/118 (4%)
 Frame = -2

Query: 784  YVSACWTTKVADETRWHAAEMRMLR*LCGVTRMNRIRNEYVRGNLKVTPVTKK----LRR 617
            Y S  WT   A   R       + R L G+T   +   +  R +++   + +     +++
Sbjct: 664  YGSEAWTFTKALSERVRITHASLERRLVGITLTQQRERDLHREDIRTMSLVRDPLNFVKK 723

Query: 616  TRLGWYGHVMRRNDNELGKRALTMNMEGF-RGRGRPKKKWMDCVKGDMCKRGVSEEMV 446
             +LGW GHV RR D             G+ R  GRP  +W D ++ ++  R    E++
Sbjct: 724  RKLGWAGHVARRKDGRWTTLMTEWRPYGWKRPVGRPPMRWTDSLRKEITTRDADGEVI 781


>AC087794-3|AAG53700.1|  417|Caenorhabditis elegans Hypothetical
           protein Y32G9A.9 protein.
          Length = 417

 Score = 45.2 bits (102), Expect = 5e-05
 Identities = 32/118 (27%), Positives = 48/118 (40%), Gaps = 5/118 (4%)
 Frame = -2

Query: 784 YVSACWTTKVADETRWHAAEMRMLR*LCGVT----RMNRIRNEYVRGNLKVTPVTKKLRR 617
           Y S  WT   A   R       + R L G+T    R   +  E +R    V      +++
Sbjct: 276 YGSEAWTFTKALSERVRITHASLERRLVGITLTQQRERDLHREDIRKMSLVRDPLNFVKK 335

Query: 616 TRLGWYGHVMRRNDNELGKRALTMNMEGF-RGRGRPKKKWMDCVKGDMCKRGVSEEMV 446
            +LGW GHV RR D             G+ R  GRP  +W D ++ ++  R    E++
Sbjct: 336 RKLGWAGHVARRKDGRWTTLMTEWRPYGWKRPVGRPPMRWTDSLRKEITTRDADGEVI 393


>AC103567-9|AAL35735.1|  204|Caenorhabditis elegans Hypothetical
           protein Y51F10.8 protein.
          Length = 204

 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 34/114 (29%), Positives = 48/114 (42%), Gaps = 8/114 (7%)
 Frame = -2

Query: 784 YVSACWTTKVADETRWHAAEMRMLR*LCGVT----RMNRIRNEYVRGNLKVTPVTKKLRR 617
           Y S  WT       R       + R L G+T    R   I  E VR   K+      +++
Sbjct: 61  YGSEAWTFTKELVERVRVTHAALERKLVGLTLTEQRERNIHREEVREKSKLRDPLIHIKK 120

Query: 616 TRLGWYGHVMRRNDNELGKRALTMN----MEGFRGRGRPKKKWMDCVKGDMCKR 467
            +LGW GHV RR D   G+    MN     +  R  GRP  +W D ++ ++  R
Sbjct: 121 RKLGWAGHVARRTD---GRWTTLMNDWCPRDEKRPVGRPPMRWNDSLRKEVTTR 171


>Z66523-2|CAA91410.1|  451|Caenorhabditis elegans Hypothetical
           protein M05D6.2 protein.
          Length = 451

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +2

Query: 419 FLLPYSSIIHHFLAHSPFTHIAFHAIHPFFLRSTSSS 529
           F   YS++I  F  H+P TH  + A  P  +   S+S
Sbjct: 414 FYAMYSNLIQEFQGHTPSTHAIYRADSPSSMPGPSTS 450


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,304,846
Number of Sequences: 27780
Number of extensions: 393982
Number of successful extensions: 951
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 911
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 947
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1903721438
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)