Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30613
         (712 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyce...    28   1.1  
SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protei...    26   4.6  
SPAC19G12.01c |cut20|lid1, apc4, SPAPJ698.04c|anaphase-promoting...    26   6.1  
SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom...    26   6.1  
SPCC584.11c |||Svf1 family protein Svf1|Schizosaccharomyces pomb...    25   8.1  

>SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +2

Query: 71  LGVDKRRHLSGASDTRIRPGQWAYSTK 151
           +G ++RR +  AS    RPG+++Y TK
Sbjct: 164 IGSERRRRILEASQDSSRPGRYSYRTK 190


>SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protein
           Sec23a|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 759

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -2

Query: 252 LIPHYTRVLLTVPRDSSLTPV 190
           L+P Y+ +  T+PR   LTPV
Sbjct: 104 LLPEYSTIEYTLPRPPQLTPV 124


>SPAC19G12.01c |cut20|lid1, apc4, SPAPJ698.04c|anaphase-promoting
           complex subunit Apc4|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 719

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = -2

Query: 513 LALPSLMLTTW*PVDGCHFSL 451
           L +  LM  T  PV GCHF L
Sbjct: 581 LIISQLMENTMLPVSGCHFGL 601


>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 534

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 243 HYTRVLLTVPRDSSLTPVTTPPLA 172
           H T   L +P+DS+  P+  PP+A
Sbjct: 138 HVTLSSLDLPKDSNTDPLRLPPIA 161


>SPCC584.11c |||Svf1 family protein Svf1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 380

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +3

Query: 12  KTMAGDL*LGVWLVYVRPGCWGSTSDGTCRV 104
           K   GD    V L++   G W +T+  TCR+
Sbjct: 64  KPNEGDYMCFVQLIHSNLGSWTTTAQSTCRI 94


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,156,801
Number of Sequences: 5004
Number of extensions: 66701
Number of successful extensions: 162
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)