Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30613
(712 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0252 + 1883709-1885306,1886338-1886466,1887319-1887341,188... 30 1.6
07_01_0989 + 8348706-8348882,8348988-8349028,8350071-8350120,835... 30 2.1
01_05_0322 + 20932151-20932470,20933076-20933146,20933259-20933266 29 3.6
06_03_0541 - 21944696-21944851,21944939-21945142,21945438-219474... 29 4.8
03_05_0850 + 28206166-28206767,28207648-28207891,28208076-282083... 29 4.8
05_04_0123 + 18210069-18213737 28 6.4
04_03_0711 + 18945012-18945692,18945790-18946845,18946863-18947066 28 6.4
02_04_0398 - 22598895-22599100,22599865-22599943 28 6.4
03_02_0962 + 12766575-12766745,12768001-12768230,12768341-127684... 28 8.4
01_06_1596 - 38514278-38514346,38514547-38514705,38514776-385148... 28 8.4
01_05_0777 + 25110356-25110662,25112569-25112789,25112880-251131... 28 8.4
>07_01_0252 +
1883709-1885306,1886338-1886466,1887319-1887341,
1887455-1888023
Length = 772
Score = 30.3 bits (65), Expect = 1.6
Identities = 13/21 (61%), Positives = 17/21 (80%)
Frame = -2
Query: 213 RDSSLTPVTTPPLAVSWSGTT 151
RDSS+ PVT+PP+AVS S +
Sbjct: 363 RDSSVNPVTSPPVAVSPSANS 383
>07_01_0989 +
8348706-8348882,8348988-8349028,8350071-8350120,
8350502-8350646,8351570-8351626,8352141-8352261,
8352436-8352945,8353242-8353289
Length = 382
Score = 29.9 bits (64), Expect = 2.1
Identities = 20/67 (29%), Positives = 23/67 (34%)
Frame = -1
Query: 241 LYPGSTHRASRLQPNTGDNTAARRLMVGYNFGAISPLARPYTGIARTRQVPSLVDPQHPG 62
L P T + G R N SPL T +ART V PQHP
Sbjct: 242 LLPSQTSSVISPDVHGGTGAVVNRSASLLNPSLFSPLTSSQTTMARTNPVAPTAPPQHPR 301
Query: 61 RT*TSHT 41
T H+
Sbjct: 302 ITQQPHS 308
>01_05_0322 + 20932151-20932470,20933076-20933146,20933259-20933266
Length = 132
Score = 29.1 bits (62), Expect = 3.6
Identities = 24/102 (23%), Positives = 39/102 (38%), Gaps = 1/102 (0%)
Frame = +2
Query: 41 RMACL-CATRVLGVDKRRHLSGASDTRIRPGQWAYSTKVVPDHETASGGVVTGVRLESRG 217
R AC C LGV++ + + ++PG W V ++ AS G
Sbjct: 22 REACQRCGEAKLGVERTDYAAMGGGWEVKPGDWCCRCCAVNNY--ASRGSCFKCGAAKND 79
Query: 218 TVSRTRV*WGISLASDDPCPEQRAITAIMDAVSRNHKSRLLC 343
+ + WG S+AS I M+ +N+ +R C
Sbjct: 80 SAAAVAQGWGFSVASQAGWKNGDWICPRMECNVQNYANRTEC 121
>06_03_0541 - 21944696-21944851,21944939-21945142,21945438-21947472,
21947644-21947720,21948289-21948477,21949188-21949448,
21949527-21949632,21951330-21951517,21951814-21951971,
21952015-21952840,21952947-21953210
Length = 1487
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
Frame = -2
Query: 249 IPHYTRVLLTVPRDSSLTPVTTPP---LAVSWSGTTLVL*AHW 130
+P L T+ ++ L PP LAV W+ L L HW
Sbjct: 1127 VPKIPETLETIQEETELAEAVNPPCSVLAVEWAHQRLPLPVHW 1169
>03_05_0850 +
28206166-28206767,28207648-28207891,28208076-28208389,
28209013-28209067
Length = 404
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/47 (31%), Positives = 19/47 (40%)
Frame = +2
Query: 8 LQNHGRRLVIGRMACLCATRVLGVDKRRHLSGASDTRIRPGQWAYST 148
L G +V CA R LG L+G SD R +W S+
Sbjct: 325 LSTFGNGMVFRHGEVGCAVRALGTSSWEELAGCSDGRAATHRWGTSS 371
>05_04_0123 + 18210069-18213737
Length = 1222
Score = 28.3 bits (60), Expect = 6.4
Identities = 17/56 (30%), Positives = 25/56 (44%)
Frame = -3
Query: 686 CLDHATLSWCSPTVXXPQRQIQS*ASTTRSLLRMRNADLHKTTSCPALTNVDDLQD 519
CL H T+ +C+ P + QS S R +R N + T PA +V +D
Sbjct: 1013 CLQHLTIEYCNSLTFWPGEEFQSLTSLKRLDIRYCN---NFTGMPPAQVSVKSFED 1065
>04_03_0711 + 18945012-18945692,18945790-18946845,18946863-18947066
Length = 646
Score = 28.3 bits (60), Expect = 6.4
Identities = 15/36 (41%), Positives = 17/36 (47%)
Frame = -3
Query: 143 YKPTGPAVYGYRSHPTGAVACRPPTPWSHIDKPYAQ 36
Y P PA GY S P A PP P S+ P+ Q
Sbjct: 404 YPPADPAAGGYTSQPYMG-APPPPPPGSYAPVPWGQ 438
>02_04_0398 - 22598895-22599100,22599865-22599943
Length = 94
Score = 28.3 bits (60), Expect = 6.4
Identities = 13/39 (33%), Positives = 16/39 (41%)
Frame = -3
Query: 131 GPAVYGYRSHPTGAVACRPPTPWSHIDKPYAQSQVAGHG 15
GP YG+ G RP PW D+P+ G G
Sbjct: 35 GPPGYGHYPPWNGGYPGRPDRPWDRPDRPWDHRPHPGPG 73
>03_02_0962 +
12766575-12766745,12768001-12768230,12768341-12768439,
12768687-12768774
Length = 195
Score = 27.9 bits (59), Expect = 8.4
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = -1
Query: 277 GAWVIGGEANPPLYPGSTHRASRLQPNTGDNTAARRLMVGYNFGA-ISP 134
G+ +IGGEA +QPN GD + R + G NF ISP
Sbjct: 64 GSTLIGGEAEALERLKKFASECCMQPNKGDKDSTRDSIYGANFSCKISP 112
>01_06_1596 -
38514278-38514346,38514547-38514705,38514776-38514898,
38514985-38515047,38515248-38515352,38515487-38515586,
38515716-38515786,38516329-38516385,38516830-38516907,
38516975-38517049,38517180-38517230,38517453-38517466,
38517516-38517616,38517703-38517764,38518346-38518372,
38518901-38519581
Length = 611
Score = 27.9 bits (59), Expect = 8.4
Identities = 19/53 (35%), Positives = 24/53 (45%)
Frame = -2
Query: 315 LTASIIAVMALCSGHGSSEARLIPHYTRVLLTVPRDSSLTPVTTPPLAVSWSG 157
LTA+ AV CSG G R + R + SL P+ TPP A + G
Sbjct: 15 LTAA--AVRRCCSGGGGGRIRAEANCPRCAAHMSVQFSLQPLPTPPPAAAAGG 65
>01_05_0777 + 25110356-25110662,25112569-25112789,25112880-25113127,
25113274-25113664,25113751-25114155,25115260-25115366,
25115833-25116170,25116206-25116486,25116645-25116889,
25116998-25117382,25117459-25117884
Length = 1117
Score = 27.9 bits (59), Expect = 8.4
Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Frame = -1
Query: 358 TEMHGAQ*P---TLMVPADGVHYCRDGPLFGAWVIGGEANPPLYPGSTHRASRLQPNTGD 188
TE+ G P T +P G+H+ D ++G V GE P + RAS+ P
Sbjct: 1002 TELGGVTYPPGVTFALPIAGIHH--DPDVWGEDV--GEFKPERFAEGVSRASKDSPALVP 1057
Query: 187 NTAARRLMVGYNFGAI 140
+ R+ VG NF +
Sbjct: 1058 FSWGPRICVGQNFALL 1073
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,658,245
Number of Sequences: 37544
Number of extensions: 567888
Number of successful extensions: 1541
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1538
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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