Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30613
         (712 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U21321-1|AAG00051.1|  507|Caenorhabditis elegans Fizzy (cdc20 pr...    30   1.4  
AF036687-2|AAB88311.2| 2224|Caenorhabditis elegans Hypothetical ...    28   5.7  

>U21321-1|AAG00051.1|  507|Caenorhabditis elegans Fizzy (cdc20
           protein family) homologprotein 1 protein.
          Length = 507

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
 Frame = +3

Query: 204 WSREAR*VEPGYSGGLASPPMTHAPNKGPSRQ*WTPSAGTIRVGYCAPCISVA-----ML 368
           WS+E R +  GY+ G       + PN+ P    +     T+RVG  + C S+A     ++
Sbjct: 229 WSQEGRYISLGYASGAVK---IYDPNR-PKTTEYVRELRTLRVGGASRCASIAWRKQGVM 284

Query: 369 VAVFETPEIANFD 407
              +++ +I N D
Sbjct: 285 TCGYKSGDIVNHD 297


>AF036687-2|AAB88311.2| 2224|Caenorhabditis elegans Hypothetical
            protein C08G9.2 protein.
          Length = 2224

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
 Frame = -1

Query: 598  PCCECVTQIY-TRQPLALPSLMLTTCK-TTSCPA 503
            P  +C+  +  T +PLAL + +L TC   +SCPA
Sbjct: 1265 PVAKCIPNMCGTGEPLALENHLLATCSPISSCPA 1298


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,200,053
Number of Sequences: 27780
Number of extensions: 407470
Number of successful extensions: 1060
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 999
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1060
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)