Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30613
         (712 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    25   0.93 
AB083209-1|BAC54133.1|   87|Apis mellifera hypothetical protein ...    24   1.6  
DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    23   3.8  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    23   3.8  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    23   3.8  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   5.0  
DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex det...    21   8.7  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       21   8.7  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   8.7  

>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 24.6 bits (51), Expect = 0.93
 Identities = 11/44 (25%), Positives = 19/44 (43%)
 Frame = -2

Query: 261 EARLIPHYTRVLLTVPRDSSLTPVTTPPLAVSWSGTTLVL*AHW 130
           EA ++P   RV + +PRD + + +        W     +   HW
Sbjct: 167 EANVVPEGARVPIEIPRDYTASDLDVEHRVAYWREDIGINLHHW 210


>AB083209-1|BAC54133.1|   87|Apis mellifera hypothetical protein
           protein.
          Length = 87

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 8/21 (38%), Positives = 16/21 (76%)
 Frame = +1

Query: 373 PFLRRQRSLISTRSHRGPLLY 435
           P++R+  ++   RS+RGP+L+
Sbjct: 31  PYIRQAVAMRDPRSNRGPVLF 51


>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 11/42 (26%), Positives = 17/42 (40%)
 Frame = -1

Query: 277 GAWVIGGEANPPLYPGSTHRASRLQPNTGDNTAARRLMVGYN 152
           G W++ G  + P   G       L+P T      R+  V Y+
Sbjct: 159 GVWILSGAISSPPLAGWNDWPEELEPGTPCQLTRRQGYVIYS 200


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 11/42 (26%), Positives = 17/42 (40%)
 Frame = -1

Query: 277 GAWVIGGEANPPLYPGSTHRASRLQPNTGDNTAARRLMVGYN 152
           G W++ G  + P   G       L+P T      R+  V Y+
Sbjct: 159 GVWILSGAISSPPLAGWNDWPEELEPGTPCQLTRRQGYVIYS 200


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 11/42 (26%), Positives = 17/42 (40%)
 Frame = -1

Query: 277 GAWVIGGEANPPLYPGSTHRASRLQPNTGDNTAARRLMVGYN 152
           G W++ G  + P   G       L+P T      R+  V Y+
Sbjct: 159 GVWILSGAISSPPLAGWNDWPEELEPGTPCQLTRRQGYVIYS 200


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 9/29 (31%), Positives = 11/29 (37%)
 Frame = -2

Query: 276 GHGSSEARLIPHYTRVLLTVPRDSSLTPV 190
           GHG S     PH+       P     TP+
Sbjct: 420 GHGHSHIHATPHHHHSHAATPHHQHSTPL 448


>DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = +3

Query: 411 ISPRAVTISEPLTPD*NGTHQ 473
           ISP A     PL P    THQ
Sbjct: 162 ISPNAYRFRPPLNPRFGPTHQ 182


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -1

Query: 271 WVIGGEANPPLYPG 230
           W++GG AN    PG
Sbjct: 581 WMMGGNANRNFMPG 594


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 7/23 (30%), Positives = 13/23 (56%)
 Frame = -2

Query: 216  PRDSSLTPVTTPPLAVSWSGTTL 148
            P D++ T +T+  + +SW    L
Sbjct: 1085 PHDTTCTTLTSQTIRISWMSPPL 1107


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 220,062
Number of Sequences: 438
Number of extensions: 5010
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21926700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)