Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30609
         (759 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0164 + 14616156-14616225,14616409-14616477,14617672-146179...    29   4.0  
05_03_0558 + 15454552-15454746,15456700-15457134                       28   7.0  
08_02_0885 + 22268287-22268988                                         28   9.3  

>07_03_0164 +
           14616156-14616225,14616409-14616477,14617672-14617902,
           14618394-14618557,14618795-14618935,14619632-14619691,
           14620358-14620522,14620676-14620732,14621084-14621148,
           14622235-14622358,14622469-14622606,14622705-14622830
          Length = 469

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = +3

Query: 18  FFYNVLCTLLWHKHYSYEQNK*YMNTRYLKKKLHSQNTVSEIK 146
           F  N  C+LLW K  S+       N  +LK K    N+V + K
Sbjct: 288 FLTNFDCSLLWVKDRSFLIQSLSTNPEFLKNKASQANSVVDFK 330


>05_03_0558 + 15454552-15454746,15456700-15457134
          Length = 209

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +3

Query: 645 NRNMTKWRLSSQNGGEQHDGRREHRLAGNRRATKV 749
           +R+    RL  + GG+   G+RE RL   R + K+
Sbjct: 155 HRSSNSRRLDGERGGKGKKGKRERRLVRKRSSQKI 189


>08_02_0885 + 22268287-22268988
          Length = 233

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 3  FILFTFFYNVLCTLLWHKHYSYEQNK 80
          F+LF FF+ +LC  + H    Y +NK
Sbjct: 19 FLLFYFFFFLLCLTMTHNCVMYLKNK 44


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,306,969
Number of Sequences: 37544
Number of extensions: 200688
Number of successful extensions: 326
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 323
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 326
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)