BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= maV30609 (759 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value U51994-2|AAA96065.3| 1311|Caenorhabditis elegans Hypothetical pr... 28 6.3 AL023810-4|CAD59138.1| 384|Caenorhabditis elegans Hypothetical ... 28 8.3 AL008881-3|CAD59164.1| 384|Caenorhabditis elegans Hypothetical ... 28 8.3 AL008881-1|CAA15517.2| 343|Caenorhabditis elegans Hypothetical ... 28 8.3 >U51994-2|AAA96065.3| 1311|Caenorhabditis elegans Hypothetical protein R03G5.3 protein. Length = 1311 Score = 28.3 bits (60), Expect = 6.3 Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 4/42 (9%) Frame = -3 Query: 181 NCWLLYKSKF*AFISET----VFCECNFFFKYLVFIYYLFCS 68 NC L K F FI +T VF E FFF L F++ FC+ Sbjct: 1003 NCKLFLKIPF-FFIKDTYSNCVFRESIFFFYKLYFVFISFCA 1043 >AL023810-4|CAD59138.1| 384|Caenorhabditis elegans Hypothetical protein Y9C2UA.1b protein. Length = 384 Score = 27.9 bits (59), Expect = 8.3 Identities = 10/19 (52%), Positives = 12/19 (63%) Frame = -3 Query: 106 FKYLVFIYYLFCSYE*CLC 50 F FIY+LFC + CLC Sbjct: 208 FTTFTFIYFLFCLFGTCLC 226 >AL008881-3|CAD59164.1| 384|Caenorhabditis elegans Hypothetical protein Y9C2UA.1b protein. Length = 384 Score = 27.9 bits (59), Expect = 8.3 Identities = 10/19 (52%), Positives = 12/19 (63%) Frame = -3 Query: 106 FKYLVFIYYLFCSYE*CLC 50 F FIY+LFC + CLC Sbjct: 208 FTTFTFIYFLFCLFGTCLC 226 >AL008881-1|CAA15517.2| 343|Caenorhabditis elegans Hypothetical protein Y9C2UA.1a protein. Length = 343 Score = 27.9 bits (59), Expect = 8.3 Identities = 10/19 (52%), Positives = 12/19 (63%) Frame = -3 Query: 106 FKYLVFIYYLFCSYE*CLC 50 F FIY+LFC + CLC Sbjct: 167 FTTFTFIYFLFCLFGTCLC 185 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 12,910,497 Number of Sequences: 27780 Number of extensions: 224882 Number of successful extensions: 537 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 521 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 537 length of database: 12,740,198 effective HSP length: 80 effective length of database: 10,517,798 effective search space used: 1809061256 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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