Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30609
         (759 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U51994-2|AAA96065.3| 1311|Caenorhabditis elegans Hypothetical pr...    28   6.3  
AL023810-4|CAD59138.1|  384|Caenorhabditis elegans Hypothetical ...    28   8.3  
AL008881-3|CAD59164.1|  384|Caenorhabditis elegans Hypothetical ...    28   8.3  
AL008881-1|CAA15517.2|  343|Caenorhabditis elegans Hypothetical ...    28   8.3  

>U51994-2|AAA96065.3| 1311|Caenorhabditis elegans Hypothetical protein
            R03G5.3 protein.
          Length = 1311

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
 Frame = -3

Query: 181  NCWLLYKSKF*AFISET----VFCECNFFFKYLVFIYYLFCS 68
            NC L  K  F  FI +T    VF E  FFF  L F++  FC+
Sbjct: 1003 NCKLFLKIPF-FFIKDTYSNCVFRESIFFFYKLYFVFISFCA 1043


>AL023810-4|CAD59138.1|  384|Caenorhabditis elegans Hypothetical
           protein Y9C2UA.1b protein.
          Length = 384

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -3

Query: 106 FKYLVFIYYLFCSYE*CLC 50
           F    FIY+LFC +  CLC
Sbjct: 208 FTTFTFIYFLFCLFGTCLC 226


>AL008881-3|CAD59164.1|  384|Caenorhabditis elegans Hypothetical
           protein Y9C2UA.1b protein.
          Length = 384

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -3

Query: 106 FKYLVFIYYLFCSYE*CLC 50
           F    FIY+LFC +  CLC
Sbjct: 208 FTTFTFIYFLFCLFGTCLC 226


>AL008881-1|CAA15517.2|  343|Caenorhabditis elegans Hypothetical
           protein Y9C2UA.1a protein.
          Length = 343

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -3

Query: 106 FKYLVFIYYLFCSYE*CLC 50
           F    FIY+LFC +  CLC
Sbjct: 167 FTTFTFIYFLFCLFGTCLC 185


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,910,497
Number of Sequences: 27780
Number of extensions: 224882
Number of successful extensions: 537
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 521
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 537
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)