Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30609
         (759 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    27   0.14 
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    25   0.58 
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       23   2.4  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    22   7.2  

>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 27.5 bits (58), Expect = 0.14
 Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +3

Query: 642 NNRNMTKWRLSSQNGGEQHDGRR-EHRLAGNRR 737
           NN+N      + QNG  Q+D R+ +++  GNR+
Sbjct: 443 NNQNADNQNANKQNGNRQNDNRQNDNKQNGNRQ 475



 Score = 23.0 bits (47), Expect = 3.1
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +3

Query: 642 NNRNMTKWRLSSQNGGEQHDGRREHRLAGNRR 737
           N +N  K   + QNG  Q+D +R     GNR+
Sbjct: 493 NRQNGNKQNDNKQNGNRQNDNKRN----GNRQ 520



 Score = 22.2 bits (45), Expect = 5.4
 Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +3

Query: 642 NNRNMTKWRLSSQNGGEQHDGRRE-HRLAGNRR 737
           N +N  K   + QNG +Q+D ++  +R   N+R
Sbjct: 483 NRQNDNKQNGNRQNGNKQNDNKQNGNRQNDNKR 515


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 25.4 bits (53), Expect = 0.58
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +2

Query: 269 ENLHNSQTYSPRKKAQRSVNITFNFITLSRYVY 367
           ENLHN Q++            TFN   + +Y+Y
Sbjct: 357 ENLHNHQSFGMDFSLNEDFYPTFNQTNVDQYLY 389


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = +3

Query: 510 SYTNQNDDSYF 542
           SYTN+ D+SYF
Sbjct: 10  SYTNKKDESYF 20


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 11/37 (29%), Positives = 16/37 (43%)
 Frame = +3

Query: 108 KKLHSQNTVSEIKA*NLDLYNNQQFIYKSLYKLPTYL 218
           K +H+ N  +     N +  NN    YK LY    Y+
Sbjct: 88  KTIHNNNNYNNNNYNNYNYNNNNYNNYKKLYYNINYI 124


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,816
Number of Sequences: 438
Number of extensions: 2649
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23875740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)