Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30605
(718 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC059945-1|AAH59945.1| 149|Homo sapiens MRPL20 protein protein. 113 8e-25
BC014316-1|AAH14316.1| 149|Homo sapiens mitochondrial ribosomal... 113 8e-25
BC009515-1|AAH09515.1| 149|Homo sapiens mitochondrial ribosomal... 113 8e-25
AL391244-3|CAI22658.1| 149|Homo sapiens mitochondrial ribosomal... 113 8e-25
AB049644-1|BAB40849.1| 149|Homo sapiens mitochondrial ribosomal... 113 8e-25
AK000886-1|BAA91406.1| 148|Homo sapiens protein ( Homo sapiens ... 65 3e-10
AJ505966-1|CAD44543.1| 171|Homo sapiens polypeptide N-acetylgal... 30 9.5
>BC059945-1|AAH59945.1| 149|Homo sapiens MRPL20 protein protein.
Length = 149
Score = 113 bits (271), Expect = 8e-25
Identities = 57/120 (47%), Positives = 81/120 (67%)
Frame = +2
Query: 200 MVFLSVINWARCRGPDEFWRKRRVFRLAAHYIGRRRNCYSIAVRNVHRALVYATKARKLK 379
MVFL+ W R R D ++R + V + A H+ GR+ CY +AVR V RA V TKAR LK
Sbjct: 1 MVFLTAQLWLRNRVTDRYFRIQEVLKHARHFRGRKNRCYRLAVRTVIRAFVKCTKARYLK 60
Query: 380 KEDMKSLWDVRITAACEQHNITLFSLREGLDRANIMLDRKSLSDLASWEPKTFEALAAVA 559
K++M++LW RITAA ++H + +L L + + L+RK L+DLA +EPKTF++LAA+A
Sbjct: 61 KKNMRTLWINRITAASQEHGLKYPALIGNLVKCQVELNRKVLADLAIYEPKTFKSLAALA 120
>BC014316-1|AAH14316.1| 149|Homo sapiens mitochondrial ribosomal
protein L20 protein.
Length = 149
Score = 113 bits (271), Expect = 8e-25
Identities = 57/120 (47%), Positives = 81/120 (67%)
Frame = +2
Query: 200 MVFLSVINWARCRGPDEFWRKRRVFRLAAHYIGRRRNCYSIAVRNVHRALVYATKARKLK 379
MVFL+ W R R D ++R + V + A H+ GR+ CY +AVR V RA V TKAR LK
Sbjct: 1 MVFLTAQLWLRNRVTDRYFRIQEVLKHARHFRGRKNRCYRLAVRTVIRAFVKCTKARYLK 60
Query: 380 KEDMKSLWDVRITAACEQHNITLFSLREGLDRANIMLDRKSLSDLASWEPKTFEALAAVA 559
K++M++LW RITAA ++H + +L L + + L+RK L+DLA +EPKTF++LAA+A
Sbjct: 61 KKNMRTLWINRITAASQEHGLKYPALIGNLVKCQVELNRKVLADLAIYEPKTFKSLAALA 120
>BC009515-1|AAH09515.1| 149|Homo sapiens mitochondrial ribosomal
protein L20 protein.
Length = 149
Score = 113 bits (271), Expect = 8e-25
Identities = 57/120 (47%), Positives = 81/120 (67%)
Frame = +2
Query: 200 MVFLSVINWARCRGPDEFWRKRRVFRLAAHYIGRRRNCYSIAVRNVHRALVYATKARKLK 379
MVFL+ W R R D ++R + V + A H+ GR+ CY +AVR V RA V TKAR LK
Sbjct: 1 MVFLTAQLWLRNRVTDRYFRIQEVLKHARHFRGRKNRCYRLAVRTVIRAFVKCTKARYLK 60
Query: 380 KEDMKSLWDVRITAACEQHNITLFSLREGLDRANIMLDRKSLSDLASWEPKTFEALAAVA 559
K++M++LW RITAA ++H + +L L + + L+RK L+DLA +EPKTF++LAA+A
Sbjct: 61 KKNMRTLWINRITAASQEHGLKYPALIGNLVKCQVELNRKVLADLAIYEPKTFKSLAALA 120
>AL391244-3|CAI22658.1| 149|Homo sapiens mitochondrial ribosomal
protein L20 protein.
Length = 149
Score = 113 bits (271), Expect = 8e-25
Identities = 57/120 (47%), Positives = 81/120 (67%)
Frame = +2
Query: 200 MVFLSVINWARCRGPDEFWRKRRVFRLAAHYIGRRRNCYSIAVRNVHRALVYATKARKLK 379
MVFL+ W R R D ++R + V + A H+ GR+ CY +AVR V RA V TKAR LK
Sbjct: 1 MVFLTAQLWLRNRVTDRYFRIQEVLKHARHFRGRKNRCYRLAVRTVIRAFVKCTKARYLK 60
Query: 380 KEDMKSLWDVRITAACEQHNITLFSLREGLDRANIMLDRKSLSDLASWEPKTFEALAAVA 559
K++M++LW RITAA ++H + +L L + + L+RK L+DLA +EPKTF++LAA+A
Sbjct: 61 KKNMRTLWINRITAASQEHGLKYPALIGNLVKCQVELNRKVLADLAIYEPKTFKSLAALA 120
>AB049644-1|BAB40849.1| 149|Homo sapiens mitochondrial ribosomal
protein L20 (L20mt) protein.
Length = 149
Score = 113 bits (271), Expect = 8e-25
Identities = 57/120 (47%), Positives = 81/120 (67%)
Frame = +2
Query: 200 MVFLSVINWARCRGPDEFWRKRRVFRLAAHYIGRRRNCYSIAVRNVHRALVYATKARKLK 379
MVFL+ W R R D ++R + V + A H+ GR+ CY +AVR V RA V TKAR LK
Sbjct: 1 MVFLTAQLWLRNRVTDRYFRIQEVLKHARHFRGRKNRCYRLAVRTVIRAFVKCTKARYLK 60
Query: 380 KEDMKSLWDVRITAACEQHNITLFSLREGLDRANIMLDRKSLSDLASWEPKTFEALAAVA 559
K++M++LW RITAA ++H + +L L + + L+RK L+DLA +EPKTF++LAA+A
Sbjct: 61 KKNMRTLWINRITAASQEHGLKYPALIGNLVKCQVELNRKVLADLAIYEPKTFKSLAALA 120
>AK000886-1|BAA91406.1| 148|Homo sapiens protein ( Homo sapiens
cDNA FLJ10024 fis, clone HEMBA1000636. ).
Length = 148
Score = 64.9 bits (151), Expect = 3e-10
Identities = 31/67 (46%), Positives = 44/67 (65%)
Frame = +2
Query: 200 MVFLSVINWARCRGPDEFWRKRRVFRLAAHYIGRRRNCYSIAVRNVHRALVYATKARKLK 379
MVFL+ W R R D ++R + V + A H+ GR+ CY +AVR V RA V TKAR LK
Sbjct: 1 MVFLTAQLWLRNRVTDRYFRIQEVLKHARHFWGRKNRCYRLAVRTVIRAFVKCTKARYLK 60
Query: 380 KEDMKSL 400
K++M+++
Sbjct: 61 KKNMRTV 67
>AJ505966-1|CAD44543.1| 171|Homo sapiens polypeptide
N-acetylgalactosaminyltransferase 15 protein.
Length = 171
Score = 29.9 bits (64), Expect = 9.5
Identities = 26/98 (26%), Positives = 42/98 (42%), Gaps = 2/98 (2%)
Frame = +2
Query: 371 KLKKEDMKS-LWDVRITAACEQHNITLFSLREGLDRANIMLDRKSLSDLASWEPKTFEAL 547
K+K ED KS +W T Q + L + +++ K+ D W KT +
Sbjct: 70 KVKGEDAKSQVWAFTYTQKILQEELCLSVITLFPGAPVVLVLCKNGDDRQQWT-KTGSHI 128
Query: 548 AAVAKYK-LETDRFIDGQDKCHPTGINLNLKDVMLEAW 658
+A + L+TD F DG + G+N +M + W
Sbjct: 129 EHIASHLCLDTDMFGDGTENGKEIGVNPCESSLMSQHW 166
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,139,480
Number of Sequences: 237096
Number of extensions: 1825818
Number of successful extensions: 2251
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2251
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8399192100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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