Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30604
         (669 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c...    25   7.5  
SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor Fep1|Sc...    25   9.9  
SPBC2F12.10 |||mitochondrial ribosomal protein subunit L35|Schiz...    25   9.9  

>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 796

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 479 FLPLFLYCFLVNIEPILFR 535
           FLP  +Y   ++I P LFR
Sbjct: 497 FLPTLVYSLFISISPFLFR 515


>SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor
           Fep1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 564

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 8/17 (47%), Positives = 14/17 (82%)
 Frame = -3

Query: 142 VLKSNRVDPVGLKYHLP 92
           V  +N+ +P+G+K+HLP
Sbjct: 399 VATANQSNPLGMKFHLP 415


>SPBC2F12.10 |||mitochondrial ribosomal protein subunit
           L35|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 370

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 577 WTRVPVYRPVCRPYSVYR*SIAKESS 654
           W R+P    VCR  S+Y  S A+E++
Sbjct: 67  WPRIPTISNVCRARSIY--SAAQENA 90


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,719,537
Number of Sequences: 5004
Number of extensions: 55953
Number of successful extensions: 116
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)